RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	RXFP3	Q9NSD7	469 aa		11.94	□□□□□ -0.5
PVT1-215	ENST00000522963	SYBU	Q9NX95	663 aa		11.94	□□□□□ -0.5
PVT1-215	ENST00000522963	BFAR	Q9NZS9	450 aa		11.94	□□□□□ -0.5
PVT1-215	ENST00000522963	SUSD2	Q9UGT4	822 aa		11.94	□□□□□ -0.5
PVT1-215	ENST00000522963	NFU1	Q9UMS0	254 aa		11.94	□□□□□ -0.5
PVT1-215	ENST00000522963	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	11.94	□□□□□ -0.5
PVT1-215	ENST00000522963	ZNF711	Q9Y462	761 aa		11.94	□□□□□ -0.5
PVT1-215	ENST00000522963	VPS13A	Q96RL7	3174 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	NEMP1	O14524	444 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	BCAT2	O15382	392 aa	Predicted RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	SLC7A4	O43246	635 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	PLRG1	O43660	514 aa	Known RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	AP1G1	O43747	822 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	CLDN7	O95471	211 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	MYBL2	P10244	700 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	CYP2A6	P11509	494 aa	Predicted RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	TNFRSF8	P28908	595 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	ATXN3	P54252	364 aa	Predicted RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	PPP2CB	P62714	309 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	PPP2CA	P67775	309 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	ELP6	Q0PNE2	266 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	SEPT6	Q14141	434 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	HIF1A	Q16665	826 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	RSPO4	Q2I0M5	234 aa	Predicted RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	UAP1L1	Q3KQV9	507 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	BBS9	Q3SYG4	887 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	TMEM52B	Q4KMG9	183 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	CCDC38	Q502W7	563 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	DNAJC21	Q5F1R6	531 aa	Known RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	CCNI2	Q6ZMN8	369 aa	Predicted RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	DPPA4	Q7L190	304 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	LYSMD3	Q7Z3D4	306 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	RABEPK	Q7Z6M1	372 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	GSPT2	Q8IYD1	628 aa	Known RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	PDIK1L	Q8N165	341 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	CEP76	Q8TAP6	659 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	BRSK1	Q8TDC3	778 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	EID2B	Q96D98	161 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	SIGLEC10	Q96LC7	697 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	WDR83	Q9BRX9	315 aa	Known RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	EDEM2	Q9BV94	578 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	PARD6B	Q9BYG5	372 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	PCED1A	Q9H1Q7	454 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	AASDHPPT	Q9NRN7	309 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	HACD3	Q9P035	362 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	CDV3	Q9UKY7	258 aa	Known RBP	11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	SLC6A14	Q9UN76	642 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	KCTD3	Q9Y597	815 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	ARL5A	Q9Y689	179 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	SLCO1B1	Q9Y6L6	691 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	CEP250	Q9BV73	2442 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	PLXNA2	O75051	1894 aa		11.93	□□□□□ -0.5
PVT1-215	ENST00000522963	C1orf232	A0A0U1RR37	186 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963		A0A1B0GTW7	788 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	LNP1	A1A4G5	178 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	SDR42E2	A6NKP2	422 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	PRR5-ARHGAP8	B1AHC4	643 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963		E7ESA3	106 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	LDB2	O43679	373 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	BUD23	O43709	281 aa	Known RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	RNGTT	O60942	597 aa	Known RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	SLC4A1	P02730	911 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	IGHV4-34	P06331	123 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	C1S	P09871	688 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	KCNA4	P22459	653 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	NFKBIA	P25963	317 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	CD27	P26842	260 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	CSNK1E	P49674	416 aa	Known RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	ARHGAP8	P85298	464 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	PDIA2	Q13087	525 aa	Known RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	CBLB	Q13191	982 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	FASTKD3	Q14CZ7	662 aa	Known RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	TAF1A	Q15573	450 aa	Predicted RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	CNGA3	Q16281	694 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	PCID2	Q5JVF3	399 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	LRRC66	Q68CR7	880 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	WDR93	Q6P2C0	686 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	LAYN	Q6UX15	382 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	LIPI	Q6XZB0	460 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	CENPU	Q71F23	418 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	GLT6D1	Q7Z4J2	308 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	TMC3	Q7Z5M5	1100 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	IGDCC3	Q8IVU1	814 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	CBARP	Q8N350	705 aa	Predicted RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	EIF1AD	Q8N9N8	165 aa	Known RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	MYRIP	Q8NFW9	859 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	OR2I1P	Q8NGU4	316 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	DNASE2B	Q8WZ79	361 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	RANBP9	Q96S59	729 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	SRPK1	Q96SB4	655 aa	Known RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	FMO2	Q99518	471 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	MYOC	Q99972	504 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	WRAP53	Q9BUR4	548 aa	Known RBP	11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	GPR63	Q9BZJ6	419 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	FOXP3	Q9BZS1	431 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	IL22	Q9GZX6	179 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	TRABD	Q9H4I3	376 aa		11.92	□□□□□ -0.5
PVT1-215	ENST00000522963	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	11.92	□□□□□ -0.5	4e-6	■□□□□ 11.2
PVT1-215	ENST00000522963	MTRF1L	Q9UGC7	380 aa	Known RBP	11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms