RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	TRIM55	Q9BYV6	548 aa		10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	FRMD8	Q9BZ67	464 aa	Predicted RBP	10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	MAGEB5	Q9BZ81	275 aa		10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	SCAND2P	Q9GZW5	306 aa	Predicted RBP	10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	TWSG1	Q9GZX9	223 aa		10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	NOL6	Q9H6R4	1146 aa	Known RBP	10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	PHPT1	Q9NRX4	125 aa	Predicted RBP	10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	DONSON	Q9NYP3	566 aa		10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	LUZP4	Q9P127	313 aa		10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	MAP10	Q9P2G4	905 aa		10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	KLHL3	Q9UH77	587 aa		10.48	□□□□□ -0.73
CLDND1-231	ENST00000515620	TRBV23OR9-2	A0A075B6M9	112 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	PIPSL	A2A3N6	862 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	CFAP69	A5D8W1	941 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	HSP90AA1	P07900	732 aa	Known RBP	10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	PNMA6A	P0CW24	399 aa	Predicted RBP	10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	ZNF28	P17035	718 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	SERPINA4	P29622	427 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	ADRA1B	P35368	520 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	ADCY8	P40145	1251 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	MAPK9	P45984	424 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	PEX6	Q13608	980 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	CYTH1	Q15438	398 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	INPP5J	Q15735	1006 aa	Predicted RBP	10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	CDO1	Q16878	200 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	ISM2	Q6H9L7	571 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	TTI2	Q6NXR4	508 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	DOK6	Q6PKX4	331 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	WDR74	Q6RFH5	385 aa	Predicted RBP	10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	C6orf15	Q6UXA7	325 aa	Predicted RBP	10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	GALNT6	Q8NCL4	622 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	SLC37A2	Q8TED4	501 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	NCSTN	Q92542	709 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	SMARCE1	Q969G3	411 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	C18orf8	Q96DM3	657 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	NUS1	Q96E22	293 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	STAMBPL1	Q96FJ0	436 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	DHTKD1	Q96HY7	919 aa	Predicted RBP	10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	FAM81B	Q96LP2	452 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	SLC29A3	Q9BZD2	475 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	PDCL3	Q9H2J4	239 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	RETREG1	Q9H6L5	497 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	UBA2	Q9UBT2	640 aa	Predicted RBP	10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	APEX2	Q9UBZ4	518 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	PLEKHM1	Q9Y4G2	1056 aa		10.47	□□□□□ -0.73
CLDND1-231	ENST00000515620	TNRC6A	Q8NDV7	1962 aa	Known RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620		A6NCN8	305 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	GOLGA6C	A6NDK9	693 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	GOLGA6B	A6NDN3	693 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	RASA4B	C9J798	803 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	RASA4	O43374	803 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	SMC2	O95347	1197 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	MAP3K6	O95382	1288 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	PLEK	P08567	350 aa	Predicted RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	GOLGA6D	P0CG33	693 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	SLC9A1	P19634	815 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	ERCC5	P28715	1186 aa	Predicted RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	GRN	P28799	593 aa	Known RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	CASP14	P31944	242 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	RGR	P47804	291 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	GABRB2	P47870	512 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	FASLG	P48023	281 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	POLD2	P49005	469 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	CDK3	Q00526	305 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	FOXM1	Q08050	763 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	NFATC2	Q13469	925 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	SEMA5A	Q13591	1074 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	C15orf59	Q2T9L4	293 aa	Predicted RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	AFMID	Q63HM1	303 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	CPZ	Q66K79	652 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	DPPA4	Q7L190	304 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	APLF	Q8IW19	511 aa	Predicted RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	EMC1	Q8N766	993 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	RTL3	Q8N8U3	475 aa	Known RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	TMEM35B	Q8NCS4	154 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	MOCOS	Q96EN8	888 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	TUBGCP5	Q96RT8	1024 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	SLC25A23	Q9BV35	468 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	TEX101	Q9BY14	249 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	ATP13A3	Q9H7F0	1226 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	METTL5	Q9NRN9	209 aa	Known RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	GOLGA6A	Q9NYA3	693 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	KCND3	Q9UK17	655 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	TMEM59L	Q9UK28	342 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	AJAP1	Q9UKB5	411 aa	Predicted RBP	10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	CTNND2	Q9UQB3	1225 aa		10.46	□□□□□ -0.73
CLDND1-231	ENST00000515620	F8	P00451	2351 aa		10.46	□□□□□ -0.74
CLDND1-231	ENST00000515620	CREG1	O75629	220 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	CLCN1	P35523	988 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	MARS	P56192	900 aa	Known RBP	10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	CHAF1B	Q13112	559 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	DENND2C	Q68D51	928 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	CCDC185	Q8N715	623 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	NELFB	Q8WX92	580 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	COQ10A	Q96MF6	247 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	OR2M4	Q96R27	311 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	SIDT1	Q9NXL6	827 aa	Known RBP	10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	SLC5A6	Q9Y289	635 aa		10.45	□□□□□ -0.74
CLDND1-231	ENST00000515620	ITPR3	Q14573	2671 aa		10.45	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms