RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 RFX8Q6ZV50 586 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 NLRP14Q86W24 1093 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PHF13Q86YI8 300 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PTPRN2Q92932 1015 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CCDC177Q9NQR7 707 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 DNAJC28Q9NX36 388 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 GULP1Q9UBP9 304 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 MIA3Q5JRA6 1907 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 MGAQ8IWI9 3026 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 A0A1W2PQU0 124 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 MAP2K7O14733 419 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 NDUFA10O95299 355 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PENKP01210 267 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 ALPIP09923 528 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CHRNA3P32297 505 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 POLD2P49005 469 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 BLVRAP53004 296 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PTP4A2Q12974 167 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 SGCGQ13326 291 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 NOMO1Q15155 1222 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 ZNF776Q68DI1 518 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 MSANTD2Q6P1R3 559 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PEX26Q7Z412 305 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 TRMT11Q7Z4G4 463 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CLDN23Q96B33 292 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 NUSAP1Q9BXS6 441 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 TTYH3Q9C0H2 523 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CATSPERBQ9H7T0 1116 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 BPIFA1Q9NP55 256 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 GIMAP4Q9NUV9 329 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 UBA2Q9UBT2 640 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 TSC2P49815 1807 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 A0A0B4J203 849 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 LRRC72A6NJI9 287 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CST8O60676 142 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PCCBP05166 539 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CD6P30203 668 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PHBP35232 272 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 C21orf59P57076 290 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 ELF3P78545 371 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 SIM1P81133 766 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PLOD1Q02809 727 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 STAT4Q14765 748 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 SNX30Q5VWJ9 437 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 FIP1L1Q6UN15 594 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 ZDHHC17Q8IUH5 632 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC41A1Q8IVJ1 513 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CFAP61Q8NHU2 1237 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC22A8Q8TCC7 542 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 TMEM174Q8WUU8 243 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CATSPER2Q96P56 530 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 UBXN6Q9BZV1 441 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 DUSP15Q9H1R2 295 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 GAREM1Q9H706 876 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 BRD7Q9NPI1 651 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 RBM22Q9NW64 420 aaKnown RBP eCLIP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 THAP10Q9P2Z0 257 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 SALL4Q9UJQ4 1053 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CHKBQ9Y259 395 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 ALG6Q9Y672 507 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 AKAP13Q12802 2813 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 GREB1Q4ZG55 1949 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 LNP1A1A4G5 178 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 IGLON5A6NGN9 336 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 H3BRJ5 948 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 NDC80O14777 642 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 CASC3O15234 703 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 MFSD11O43934 449 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 RING1Q06587 406 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 RAD51Q06609 339 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 SPARCL1Q14515 664 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 HNRNPA1L2Q32P51 320 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 C22orf39Q6P5X5 142 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ISLR2Q6UXK2 745 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 CCDC81Q6ZN84 652 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ANKRD13BQ86YJ7 626 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 TEX9Q8N6V9 391 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ANKS4BQ8N8V4 417 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ZFAND2BQ8WV99 257 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 OR1A2Q9Y585 309 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 CPED1A4D0V7 1026 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 CCL22O00626 93 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 TXNDC9O14530 226 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 NPPAP01160 153 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 GLI1P08151 1106 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 CPA3P15088 417 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ID4P47928 161 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ARF5P84085 180 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 GALNT3Q14435 633 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ACOX1Q15067 660 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 ANKDD1AQ495B1 522 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 BRMS1LQ5PSV4 323 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 MFSD7Q6UXD7 560 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 AADATQ8N5Z0 425 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 LPCAT1Q8NF37 534 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 OR2T3Q8NH03 318 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 RHBDD1Q8TEB9 315 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 GAB3Q8WWW8 586 aa7.91□□□□□ -1.14
LIMCH1-219ENST00000514096 IFT81Q8WYA0 676 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms