RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 THOP1P52888 689 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 PPARDQ03181 441 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 CDK18Q07002 472 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 MSLNQ13421 630 aaPredicted RBP9.7□□□□□ -0.86
RNF4-221ENST00000513643 CAMK2BQ13554 666 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 ACOX1Q15067 660 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 ODF2Q5BJF6 829 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 LVRNQ6Q4G3 990 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 ADAMTSL4Q6UY14 1074 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 CCNI2Q6ZMN8 369 aaPredicted RBP9.7□□□□□ -0.86
RNF4-221ENST00000513643 TMC3Q7Z5M5 1100 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 ZC3H18Q86VM9 953 aaKnown RBP9.7□□□□□ -0.86
RNF4-221ENST00000513643 PHACTR4Q8IZ21 702 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 RBFAQ8N0V3 343 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 NDUFAF2Q8N183 169 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 SPATA22Q8NHS9 363 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 HTR3CQ8WXA8 447 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 OR1E3Q8WZA6 343 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 NUS1Q96E22 293 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 OXNAD1Q96HP4 312 aaPredicted RBP9.7□□□□□ -0.86
RNF4-221ENST00000513643 COX14Q96I36 57 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 RBM15Q96T37 977 aaKnown RBP eCLIP9.7□□□□□ -0.86
RNF4-221ENST00000513643 LRRC61Q9BV99 259 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 BOCQ9BWV1 1114 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 ABCG8Q9H221 673 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 MAGEE1Q9HCI5 957 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 FGF22Q9HCT0 170 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 NFKBIL1Q9UBC1 381 aaPredicted RBP9.7□□□□□ -0.86
RNF4-221ENST00000513643 FTSJ1Q9UET6 329 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 TRHDEQ9UKU6 1024 aa9.7□□□□□ -0.86
RNF4-221ENST00000513643 CNOT6Q9ULM6 557 aaKnown RBP9.7□□□□□ -0.86
RNF4-221ENST00000513643 CFAP47Q6ZTR5 3102 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 H3BM21 787 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 YY2O15391 372 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 TDRD6O60522 2096 aaKnown RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 NEBLO76041 1014 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 TJP3O95049 919 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 CLDN7O95471 211 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 FTCDO95954 541 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 PCCBP05166 539 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 MYCLP1P12525 358 aaPredicted RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 SPINK2P20155 84 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 CA4P22748 312 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 RBL1P28749 1068 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 SPINT3P49223 89 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 NAP1L1P55209 391 aaKnown RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 SRP54P61011 504 aaKnown RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 OTUD4Q01804 1114 aaKnown RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 FOXC1Q12948 553 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 DNAJC3Q13217 504 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 HENMT1Q5T8I9 393 aaKnown RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 OGFOD3Q6PK18 319 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 PEX26Q7Z412 305 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 CCDC50Q8IVM0 306 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 FSTL5Q8N475 847 aaPredicted RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 OR56A4Q8NGH8 313 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 SLC35B2Q8TB61 432 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 DTX3LQ8TDB6 740 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 SCAMP4Q969E2 229 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 MRGPRX2Q96LB1 330 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 APOLD1Q96LR9 279 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 WDR92Q96MX6 357 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 AGAP2Q99490 1192 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 MLPHQ9BV36 600 aaPredicted RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 DUSP23Q9BVJ7 150 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 ADGRE3Q9BY15 652 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 FRMD8Q9BZ67 464 aaPredicted RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 TSGA10Q9BZW7 698 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 C10orf88Q9H8K7 445 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 GRPEL1Q9HAV7 217 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 SPASTQ9UBP0 616 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 APOBEC3BQ9UH17 382 aaKnown RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 FAM153AQ9UHL3 310 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 KLK13Q9UKR3 277 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 PACSIN2Q9UNF0 486 aaPredicted RBP9.69□□□□□ -0.86
RNF4-221ENST00000513643 SLC17A4Q9Y2C5 497 aa9.69□□□□□ -0.86
RNF4-221ENST00000513643 ACACAQ13085 2346 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 PLXNB3Q9ULL4 1909 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 TCRBV7S2A1N4TA0A589 114 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 EME2A4GXA9 379 aaPredicted RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 C5orf60A6NFR6 353 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 GOLGA6L6A8MZA4 724 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 CACNB4O00305 520 aaPredicted RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 PDE2AO00408 941 aaPredicted RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 KRT86O43790 486 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 RFPL3O75679 317 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 RASGRP1O95267 797 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 NDST3O95803 873 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 GP1BAP07359 652 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 CELA2BP08218 269 aaPredicted RBP9.68□□□□□ -0.86
RNF4-221ENST00000513643 RBP3P10745 1247 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 NFKB1P19838 968 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 KELP23276 732 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 HTR1BP28222 390 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 ADRA1AP35348 466 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 BLKP51451 505 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 WNT3AP56704 352 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 CDK3Q00526 305 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 ARHGEF7Q14155 803 aa9.68□□□□□ -0.86
RNF4-221ENST00000513643 PRRT3Q5FWE3 981 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms