RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MIOSQ9NXC5 875 aa4.16□□□□□ -1.74
USP54-217ENST00000498213 VSX1Q9NZR4 365 aaPredicted RBP4.16□□□□□ -1.74
USP54-217ENST00000498213 ORC3Q9UBD5 711 aaPredicted RBP4.16□□□□□ -1.74
USP54-217ENST00000498213 AFF4Q9UHB7 1163 aaKnown RBP4.16□□□□□ -1.74
USP54-217ENST00000498213 ZDHHC8Q9ULC8 765 aa4.16□□□□□ -1.74
USP54-217ENST00000498213 ENTPD2Q9Y5L3 495 aa4.16□□□□□ -1.74
USP54-217ENST00000498213 RAD54BQ9Y620 910 aa4.16□□□□□ -1.74
USP54-217ENST00000498213 CYP46A1Q9Y6A2 500 aa4.16□□□□□ -1.74
USP54-217ENST00000498213 WNT6Q9Y6F9 365 aa4.16□□□□□ -1.74
USP54-217ENST00000498213 ARHGEF17Q96PE2 2063 aaPredicted RBP4.15□□□□□ -1.74
USP54-217ENST00000498213 HIVEP3Q5T1R4 2406 aa4.15□□□□□ -1.74
USP54-217ENST00000498213 hCG_2014768A0A024R1R8 64 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 hCG_1642624A0A1W2PR95 340 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 WIPF3A6NGB9 483 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 LINC00473A8K010 186 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 H3BUI4 141 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 PRRG1O14668 218 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 FLRT2O43155 660 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 AP5Z1O43299 807 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 CHMP2AO43633 222 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 B3GAT3O94766 335 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 SLITRK3O94933 977 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 OAZ2O95190 189 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 EBLN1P0CF75 366 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 NR2F6P10588 404 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 MCF2P10911 925 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 CYP11B2P19099 503 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 DRD1P21728 446 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 RPA1P27694 616 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 KCNJ5P48544 419 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 NEK2P51955 445 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 HK3P52790 923 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 ARPP19P56211 112 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 DNAJC3Q13217 504 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 DRP2Q13474 957 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 PRPF4BQ13523 1007 aaKnown RBP4.15□□□□□ -1.75
USP54-217ENST00000498213 MYBPC2Q14324 1141 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 PDIA5Q14554 519 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 E2F5Q15329 346 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 UGCGQ16739 394 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 UPP1Q16831 310 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 HLA-BQ31612 363 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 RBM20Q5T481 1227 aaKnown RBP4.15□□□□□ -1.75
USP54-217ENST00000498213 TEDDM1Q5T9Z0 273 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 ZNF280DQ6N043 979 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 LAYNQ6UX15 382 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 AMIGO2Q86SJ2 522 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 FAM98AQ8NCA5 519 aaKnown RBP4.15□□□□□ -1.75
USP54-217ENST00000498213 SPATA20Q8TB22 786 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 DEPTORQ8TB45 409 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 POC1BQ8TC44 478 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 NTN5Q8WTR8 489 aaPredicted RBP4.15□□□□□ -1.75
USP54-217ENST00000498213 HMGB4Q8WW32 186 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 PBKQ96KB5 322 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 IFT74Q96LB3 600 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 JAKMIP1Q96N16 626 aaKnown RBP4.15□□□□□ -1.75
USP54-217ENST00000498213 OSBPL9Q96SU4 736 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 CCDC94Q9BW85 323 aaPredicted RBP4.15□□□□□ -1.75
USP54-217ENST00000498213 EBF3Q9H4W6 596 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 TTC12Q9H892 705 aaPredicted RBP4.15□□□□□ -1.75
USP54-217ENST00000498213 KIF9Q9HAQ2 790 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 GPR35Q9HC97 309 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 ASAH2Q9NR71 780 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 EHD2Q9NZN4 543 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 VPS54Q9P1Q0 977 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 IP6K2Q9UHH9 426 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 TNFSF13BQ9Y275 285 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 CDY1Q9Y6F8 540 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 DOCK5Q9H7D0 1870 aa4.15□□□□□ -1.75
USP54-217ENST00000498213 NIPBLQ6KC79 2804 aaeCLIP4.15□□□□□ -1.75
USP54-217ENST00000498213 PCDH15Q96QU1 1955 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 FN1P02751 2386 aaKnown RBP4.14□□□□□ -1.75
USP54-217ENST00000498213 CRYBG3Q68DQ2 2970 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 CCDC168Q8NDH2 2452 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 LRRC3CA6NJW4 275 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 EDIL3O43854 480 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 NEMFO60524 1076 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 CCNT1O60563 726 aaKnown RBP4.14□□□□□ -1.75
USP54-217ENST00000498213 PROP1O75360 226 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 NXPH3O95157 252 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 MATN4O95460 622 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 SEC24AO95486 1093 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 TDP2O95551 362 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 PRF1P14222 555 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 TYRP14679 529 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 ARSAP15289 507 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 TYMPP19971 482 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 GLRA2P23416 452 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 CDC25CP30307 473 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 LRPAP1P30533 357 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 KRT2P35908 639 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 MATKP42679 507 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 TUFMP49411 452 aaKnown RBP4.14□□□□□ -1.75
USP54-217ENST00000498213 AARSP49588 968 aaKnown RBP eCLIP4.14□□□□□ -1.75
USP54-217ENST00000498213 MAP2K6P52564 334 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 DMP1Q13316 513 aaPredicted RBP4.14□□□□□ -1.75
USP54-217ENST00000498213 RUNX3Q13761 415 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 BYSLQ13895 437 aaKnown RBP4.14□□□□□ -1.75
USP54-217ENST00000498213 CAPSQ13938 189 aa4.14□□□□□ -1.75
USP54-217ENST00000498213 TRIM29Q14134 588 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms