RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SULT2A1Q06520 285 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 DHX9Q08211 1270 aaKnown RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PTP4A2Q12974 167 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 IL18Q14116 193 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PIGHQ14442 188 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 MAPK6Q16659 721 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SPRED3Q2MJR0 410 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 P3H1Q32P28 736 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SLC44A4Q53GD3 710 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 COLEC12Q5KU26 742 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 NAA35Q5VZE5 725 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 DUPD1Q68J44 220 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 RAET1GQ6H3X3 334 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 WBP2NLQ6ICG8 309 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 RTL4Q6ZR62 310 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 C3orf62Q6ZUJ4 267 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 RFPL4BQ6ZWI9 263 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 USP53Q70EK8 1073 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 CHST9Q7L1S5 443 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 NDUFAF7Q7L592 441 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 FAM122BQ7Z309 247 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 FAM228AQ86W67 206 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 CDR2LQ86X02 465 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 APLFQ8IW19 511 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SLC38A6Q8IZM9 456 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 GPR137CQ8N3F9 429 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 LZTR1Q8N653 840 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 IL17RCQ8NAC3 791 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 NHLRC2Q8NBF2 726 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PSMA8Q8TAA3 256 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 BRIX1Q8TDN6 353 aaKnown RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 STK35Q8TDR2 534 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 MITD1Q8WV92 249 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PSPC1Q8WXF1 523 aaKnown RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 RLN3Q8WXF3 142 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 BRF1Q92994 677 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 KLRG1Q96E93 195 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 LRRC46Q96FV0 321 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 FBXL20Q96IG2 436 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 FCRL2Q96LA5 508 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 DGAT2Q96PD7 388 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PSMG3-AS1Q96PY0 264 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 MMS19Q96T76 1030 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 C11orf70Q9BRQ4 267 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 C1orf43Q9BWL3 253 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PHF7Q9BWX1 381 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SLC12A9Q9BXP2 914 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 MRPL1Q9BYD6 325 aaKnown RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PANK2Q9BZ23 570 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 RTN4RQ9BZR6 473 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 MFFQ9GZY8 342 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 FAM107BQ9H098 131 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SLC6A15Q9H2J7 730 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 ZNF552Q9H707 407 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SP110Q9HB58 689 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SLC40A1Q9NP59 571 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 NT5MQ9NPB1 228 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PRMT8Q9NR22 394 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SETD4Q9NVD3 440 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PANK4Q9NVE7 773 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 SMARCAL1Q9NZC9 954 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 VSX1Q9NZR4 365 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 KANSL3Q9P2N6 904 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 TNFRSF10DQ9UBN6 386 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 WNT16Q9UBV4 365 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PEF1Q9UBV8 284 aaKnown RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 CHRNA9Q9UGM1 479 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 CYB5R1Q9UHQ9 305 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 ENPP5Q9UJA9 477 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 TINAGQ9UJW2 476 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 CDH7Q9ULB5 785 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 ATXN7L1Q9ULK2 861 aaPredicted RBP4.23□□□□□ -1.73
BRCA1-220ENST00000492859 AP4E1Q9UPM8 1137 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 ERGIC3Q9Y282 383 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 PLEKHA6Q9Y2H5 1048 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 NOX1Q9Y5S8 564 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 CSADQ9Y600 493 aa4.23□□□□□ -1.73
BRCA1-220ENST00000492859 NPC1L1Q9UHC9 1359 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 A0A087WUV0 522 aaPredicted RBP4.22□□□□□ -1.73
BRCA1-220ENST00000492859 A0A087WZY1 265 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 GSTTP1A0A1W2PQM5 241 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 BCLAF3A2AJT9 711 aaKnown RBP4.22□□□□□ -1.73
BRCA1-220ENST00000492859 SLC35F4A4IF30 521 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 MYO1GB0I1T2 1018 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 CYR61O00622 381 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 CTDSP2O14595 271 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 KLK10O43240 276 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 TNFSF14O43557 240 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 VPS4BO75351 444 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 SUPT3HO75486 399 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 TOM1L1O75674 476 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 SLCO2B1O94956 709 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 OR6B1O95007 311 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 ANXA2P07355 339 aaKnown RBP4.22□□□□□ -1.73
BRCA1-220ENST00000492859 IQCF3P0C7M6 154 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 IL1R1P14778 569 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 GNSP15586 552 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 SELPP16109 830 aa4.22□□□□□ -1.73
BRCA1-220ENST00000492859 PTPN1P18031 435 aaKnown RBP4.22□□□□□ -1.73
BRCA1-220ENST00000492859 TNNI3P19429 210 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms