RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MAP3K21Q5TCX8 1036 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 FAM109BQ6ICB4 259 aaPredicted RBP2.25□□□□□ -2.05
HMGB1-208ENST00000490788 NAPEPLDQ6IQ20 393 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 SLC22A25Q6T423 547 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 CRELD2Q6UXH1 353 aaPredicted RBP2.25□□□□□ -2.05
HMGB1-208ENST00000490788 H1FNTQ75WM6 255 aaPredicted RBP2.25□□□□□ -2.05
HMGB1-208ENST00000490788 LRRC8DQ7L1W4 858 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 RRM2BQ7LG56 351 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 MON1AQ86VX9 555 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 SUGP1Q8IWZ8 645 aaKnown RBP2.25□□□□□ -2.05
HMGB1-208ENST00000490788 MB21D2Q8IYB1 491 aaPredicted RBP2.25□□□□□ -2.05
HMGB1-208ENST00000490788 CCDC105Q8IYK2 499 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 SMRP1Q8NCR6 262 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 MCPH1Q8NEM0 835 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 OR4N2Q8NGD1 307 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 MORC4Q8TE76 937 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 TMEM170AQ8WVE7 144 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 TMED6Q8WW62 240 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 ADAMTS14Q8WXS8 1223 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 TWNKQ96RR1 684 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 SIN3AQ96ST3 1273 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 YME1L1Q96TA2 773 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 EYA3Q99504 573 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 REEP2Q9BRK0 252 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 SLC25A33Q9BSK2 321 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.25□□□□□ -2.05
HMGB1-208ENST00000490788 VPS33BQ9H267 617 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 CD93Q9NPY3 652 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 RRP7BPQ9NSQ0 103 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 ANKRD10Q9NXR5 420 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 THEGQ9P2T0 379 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 SCN4AP35499 1836 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 KAT6BQ8WYB5 2073 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 SCN11AQ9UI33 1791 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 CEP290O15078 2479 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 USP54Q70EL1 1684 aa2.25□□□□□ -2.05
HMGB1-208ENST00000490788 RBBP6Q7Z6E9 1792 aaKnown RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 ABCC6O95255 1503 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 MED19A0JLT2 244 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 PLSCR5A0PG75 271 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 C17orf100A8MU93 164 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 BTBD18B2RXH4 712 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 EBAG9O00559 213 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 TSPAN4O14817 238 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 LETM1O95202 739 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CH25HO95992 272 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 IRF1P10914 325 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 DAOP14920 347 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 PTPN2P17706 415 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 XBP1P17861 261 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CD58P19256 250 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 DCTDP32321 178 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 PSMC2P35998 433 aaKnown RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 MAPK9P45984 424 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CENPAP49450 140 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 GAS1P54826 345 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CDH15P55291 814 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 SEC61A1P61619 476 aaKnown RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CYP4A11Q02928 519 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 SLC18A2Q05940 514 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 TRPC3Q13507 836 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 PKP1Q13835 747 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 KEAP1Q14145 624 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 NEDD9Q14511 834 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 TAF11Q15544 211 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 GPR68Q15743 365 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 NAA35Q5VZE5 725 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 RETSATQ6NUM9 610 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 SPSB3Q6PJ21 355 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CPLX2Q6PUV4 134 aaKnown RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 MOB3CQ70IA8 216 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 TADA2BQ86TJ2 420 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 TBC1D26Q86UD7 250 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 GPAT4Q86UL3 456 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 FAM160B2Q86V87 743 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 SFTPA2Q8IWL1 248 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 DCP1BQ8IZD4 617 aaKnown RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 TRIB2Q92519 343 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 KIF1BPQ96EK5 621 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 FAM84BQ96KN1 310 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 ZNF570Q96NI8 536 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 DUX5Q96PT3 197 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 OR1F2PQ96R84 312 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 BBS4Q96RK4 519 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CTAGE1Q96RT6 745 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 FIZ1Q96SL8 496 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 NUF2Q9BZD4 464 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 GLIS2Q9BZE0 524 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 INTS2Q9H0H0 1204 aaKnown RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 LMAN2LQ9H0V9 348 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 YY1AP1Q9H869 796 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 VEZTQ9HBM0 779 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 OCIAD1Q9NX40 245 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 OR6C3Q9NZP0 311 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CGNQ9P2M7 1197 aaKnown RBP2.24□□□□□ -2.05
HMGB1-208ENST00000490788 PEMTQ9UBM1 199 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 HDAC6Q9UBN7 1215 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 NDRG3Q9UGV2 375 aa2.24□□□□□ -2.05
HMGB1-208ENST00000490788 CARD8Q9Y2G2 431 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms