RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 NEMP2A6NFY4 417 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 PSMD11O00231 422 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 CACNB4O00305 520 aaPredicted RBP18.1■□□□□ 0.49
COL9A3-214ENST00000490398 CAPNS1P04632 268 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 PIRTP0C851 137 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 ALPPL2P10696 532 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 CKMT1AP12532 417 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 POLD2P49005 469 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 CAMK2BQ13554 666 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 PCSK7Q16549 785 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 FAM181AQ8N9Y4 354 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 OR56A4Q8NGH8 313 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 CCL4L1Q8NHW4 92 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 TFB1MQ8WVM0 346 aaKnown RBP18.1■□□□□ 0.49
COL9A3-214ENST00000490398 EID2BQ96D98 161 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 QKIQ96PU8 341 aaKnown RBP eCLIP18.1■□□□□ 0.49
COL9A3-214ENST00000490398 TEX101Q9BY14 249 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 WDR26Q9H7D7 661 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.1■□□□□ 0.49
COL9A3-214ENST00000490398 CAPN6Q9Y6Q1 641 aa18.1■□□□□ 0.49
COL9A3-214ENST00000490398 GOLGA6CA6NDK9 693 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 GOLGA6BA6NDN3 693 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 ANKRD66B4E2M5 251 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 LMO7DNF2Z398 122 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 DDX3YO15523 660 aaKnown RBP18.09■□□□□ 0.49
COL9A3-214ENST00000490398 RASGRP1O95267 797 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 FTCDO95954 541 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 HOXC4P09017 264 aaPredicted RBP18.09■□□□□ 0.49
COL9A3-214ENST00000490398 GOLGA6DP0CG33 693 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 NFKB1P19838 968 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 HTR1BP28222 390 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 INSM1Q01101 510 aaPredicted RBP18.09■□□□□ 0.49
COL9A3-214ENST00000490398 NOMO1Q15155 1222 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 ST3GAL2Q16842 350 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 HES3Q5TGS1 186 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 RAET1GQ6H3X3 334 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 GUSBP11Q6P575 273 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 TRIM74Q86UV6 250 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 SLC35F3Q8IY50 421 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 ZNF567Q8N184 647 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 LYSMD1Q96S90 227 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 BOCQ9BWV1 1114 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 OSBPL8Q9BZF1 889 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 GOLGA6AQ9NYA3 693 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 ADGRG1Q9Y653 693 aa18.09■□□□□ 0.49
COL9A3-214ENST00000490398 LRP4O75096 1905 aa18.08■□□□□ 0.49
COL9A3-214ENST00000490398 CCDC66A2RUB6 948 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 PMPCBO75439 489 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 CEACAM5P06731 702 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 NFKBIAP25963 317 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 RBL1P28749 1068 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 RWDD2BP57060 319 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 RPL26P61254 145 aaKnown RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 CDK3Q00526 305 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 OTUD4Q01804 1114 aaKnown RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 KIF5AQ12840 1032 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 PERM1Q5SV97 790 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 ZCCHC8Q6NZY4 707 aaKnown RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 LYSMD3Q7Z3D4 306 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 NDUFAF2Q8N183 169 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 ACTL9Q8TC94 416 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 AP2M1Q96CW1 435 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 OXNAD1Q96HP4 312 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 TBATAQ96M53 351 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 MLPHQ9BV36 600 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 DUSP23Q9BVJ7 150 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 RIOK2Q9BVS4 552 aaKnown RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 FRMD8Q9BZ67 464 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 TMEM168Q9H0V1 697 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 SUDS3Q9H7L9 328 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 CYP4F12Q9HCS2 524 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 HAUS2Q9NVX0 235 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 RPL26L1Q9UNX3 145 aaKnown RBP18.08■□□□□ 0.48
COL9A3-214ENST00000490398 SPO11Q9Y5K1 396 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 ST14Q9Y5Y6 855 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 DGKBQ9Y6T7 804 aa18.08■□□□□ 0.48
COL9A3-214ENST00000490398 C1orf232A0A0U1RR37 186 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 CPED1A4D0V7 1026 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 APOC4-APOC2K7ER74 178 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 TAF4O00268 1085 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 TPP1O14773 563 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 TNFP01375 233 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 APOC2P02655 101 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 ANXA6P08133 673 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 MYCLP1P12525 358 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-214ENST00000490398 CA4P22748 312 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 COPS2P61201 443 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 CDK18Q07002 472 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 DPTQ07507 201 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 HS1BP3Q53T59 392 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 C6orf132Q5T0Z8 1188 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 KDELC1Q6UW63 502 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 BZW1Q7L1Q6 419 aaKnown RBP18.07■□□□□ 0.48
COL9A3-214ENST00000490398 EFL1Q7Z2Z2 1120 aaKnown RBP18.07■□□□□ 0.48
COL9A3-214ENST00000490398 KDF1Q8NAX2 398 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-214ENST00000490398 IFI44Q8TCB0 444 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 HTR3CQ8WXA8 447 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 CALR3Q96L12 384 aaKnown RBP18.07■□□□□ 0.48
COL9A3-214ENST00000490398 GORASP1Q9BQQ3 440 aa18.07■□□□□ 0.48
COL9A3-214ENST00000490398 SIRPGQ9P1W8 387 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms