RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 SATB2Q9UPW6 733 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 PTPRQQ9UMZ3 2332 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 A0A0J9YYE9 177 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 A0A1W2PNU3 283 aaPredicted RBP22.97■■□□□ 1.27
COL9A3-213ENST00000489045 DXOO77932 396 aaKnown RBP22.97■■□□□ 1.27
COL9A3-213ENST00000489045 MTA2O94776 668 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 TRBC1P01850 177 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 CES1P23141 567 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 ARHGAP25P42331 645 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 PDX1P52945 283 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 CDK3Q00526 305 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 NIPAL4Q0D2K0 466 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 CCDC173Q0VFZ6 552 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 RFLNAQ6ZTI6 216 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 TECPR1Q7Z6L1 1165 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 CNGA4Q8IV77 575 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 CCDC13Q8IYE1 715 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 PLD5Q8N7P1 536 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 ZNF830Q96NB3 372 aaPredicted RBP22.97■■□□□ 1.27
COL9A3-213ENST00000489045 FRMD8Q9BZ67 464 aaPredicted RBP22.97■■□□□ 1.27
COL9A3-213ENST00000489045 CARS2Q9HA77 564 aaKnown RBP22.97■■□□□ 1.27
COL9A3-213ENST00000489045 CD84Q9UIB8 345 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 CHKBQ9Y259 395 aa22.97■■□□□ 1.27
COL9A3-213ENST00000489045 B4DGG1 531 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 NTN3O00634 580 aaPredicted RBP22.96■■□□□ 1.27
COL9A3-213ENST00000489045 CEACAM5P06731 702 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 CA4P22748 312 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 PCBP4P57723 403 aaKnown RBP22.96■■□□□ 1.27
COL9A3-213ENST00000489045 OGFOD3Q6PK18 319 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 SFTPA2Q8IWL1 248 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 OR6C4Q8NGE1 309 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 LGMNQ99538 433 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 ASCL3Q9NQ33 180 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 ZFC3H1O60293 1989 aaKnown RBP22.96■■□□□ 1.27
COL9A3-213ENST00000489045 UNC13CQ8NB66 2214 aa22.96■■□□□ 1.27
COL9A3-213ENST00000489045 CAPN8A6NHC0 703 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 C3orf70A6NLC5 250 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-213ENST00000489045 ZNF487B1APH4 448 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 AKR1B15C9JRZ8 316 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-213ENST00000489045 KCNK1O00180 336 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 NOBOXO60393 691 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 PRLP01236 227 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 KRT1P04264 644 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 ZNF30P17039 623 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 TEAD1P28347 426 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 CCL7P80098 99 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 PTSQ03393 145 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 DPTQ07507 201 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 PPIDQ08752 370 aaKnown RBP22.95■■□□□ 1.26
COL9A3-213ENST00000489045 TBX2Q13207 712 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-213ENST00000489045 SLC9A4Q6AI14 798 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 LPCAT1Q8NF37 534 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-213ENST00000489045 PTCD2Q8WV60 388 aaKnown RBP22.95■■□□□ 1.26
COL9A3-213ENST00000489045 HIC2Q96JB3 615 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 GFM1Q96RP9 751 aaKnown RBP22.95■■□□□ 1.26
COL9A3-213ENST00000489045 ABCG8Q9H221 673 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 DPEP2Q9H4A9 486 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 HEY1Q9Y5J3 304 aa22.95■■□□□ 1.26
COL9A3-213ENST00000489045 LOC400499M0QZD8 3231 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 PMS2P1A4D2B8 440 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 SOD1P00441 154 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 JCHAINP01591 159 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 FUCA1P04066 466 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 RPLP0P05388 317 aaKnown RBP22.94■■□□□ 1.26
COL9A3-213ENST00000489045 GPR1P46091 355 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 GNPDA1P46926 289 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 ERVPABLB-1P60509 514 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 ZBTB17Q13105 803 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 C14orf28Q4W4Y0 310 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 CERCAMQ5T4B2 595 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 VSIG1Q86XK7 387 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 ZNF248Q8NDW4 579 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 GPBAR1Q8TDU6 330 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 AP2M1Q96CW1 435 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 PCDH9Q9HC56 1237 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 THSD1Q9NS62 852 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 SUFUQ9UMX1 484 aa22.94■■□□□ 1.26
COL9A3-213ENST00000489045 A0A1W2PQM1 296 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 D6RAR5 112 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 APOL1O14791 398 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 GLB1P16278 677 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 CD86P42081 329 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 POLD2P49005 469 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 STC1P52823 247 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 IFI35P80217 286 aaPredicted RBP22.93■■□□□ 1.26
COL9A3-213ENST00000489045 FOXR1Q6PIV2 292 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 DOK6Q6PKX4 331 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 IGF2-ASQ6U949 168 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 ZNF765Q7L2R6 523 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 NRROSQ86YC3 692 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 CCNJLQ8IV13 435 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 SPACA3Q8IXA5 215 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 SCAMP4Q969E2 229 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 PRR11Q96HE9 360 aaPredicted RBP22.93■■□□□ 1.26
COL9A3-213ENST00000489045 NAF1Q96HR8 494 aaKnown RBP22.93■■□□□ 1.26
COL9A3-213ENST00000489045 GSDMCQ9BYG8 508 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 LRRN3Q9H3W5 708 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 APPL1Q9UKG1 709 aa22.93■■□□□ 1.26
COL9A3-213ENST00000489045 DNPEPQ9ULA0 475 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms