RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ISL1P61371 349 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 PHEXP78562 749 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 SORDQ00796 357 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 HIST2H2ACQ16777 129 aaPredicted RBP3.17□□□□□ -1.9
VPS50-216ENST00000484954 SYT16Q17RD7 645 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 ALG11Q2TAA5 492 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 KCNT1Q5JUK3 1230 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 ZNF280DQ6N043 979 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 FAM122CQ6P4D5 195 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 CPLX2Q6PUV4 134 aaKnown RBP3.17□□□□□ -1.9
VPS50-216ENST00000484954 C19orf48Q6RUI8 117 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 CYP26C1Q6V0L0 522 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 KRBA2Q6ZNG9 492 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 SLC26A9Q7LBE3 791 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 ANKRD18AQ8IVF6 992 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 RHBDF1Q96CC6 855 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 GCC1Q96CN9 775 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 TRMT61BQ9BVS5 477 aaKnown RBP3.17□□□□□ -1.9
VPS50-216ENST00000484954 NDST4Q9H3R1 872 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 PLEKHA5Q9HAU0 1116 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 HINT3Q9NQE9 182 aaKnown RBP3.17□□□□□ -1.9
VPS50-216ENST00000484954 ABCF3Q9NUQ8 709 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 MCM9Q9NXL9 1143 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 TAAR2Q9P1P5 351 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 HCN3Q9P1Z3 774 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 PADI1Q9ULC6 663 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 GAB2Q9UQC2 676 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 OR2W1Q9Y3N9 320 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 DGKBQ9Y6T7 804 aa3.17□□□□□ -1.9
VPS50-216ENST00000484954 FAM172BPA6NC97 362 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 ASPDHA6ND91 283 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 TAF4O00268 1085 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 CAPN9O14815 690 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 SEC14L5O43304 696 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 FGF17O60258 216 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 GUCY1B2O75343 617 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 COX7A2P14406 83 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 BDKRB2P30411 391 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 METAP2P50579 478 aaKnown RBP eCLIP3.16□□□□□ -1.9
VPS50-216ENST00000484954 TAF12Q16514 161 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 CCDC96Q2M329 555 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 COL28A1Q2UY09 1125 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 GPATCH4Q5T3I0 446 aaKnown RBP3.16□□□□□ -1.9
VPS50-216ENST00000484954 IRAK1BP1Q5VVH5 260 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 PLA2G4FQ68DD2 849 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 TRMT1LQ7Z2T5 733 aaKnown RBP3.16□□□□□ -1.9
VPS50-216ENST00000484954 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.16□□□□□ -1.9
VPS50-216ENST00000484954 SLC24A4Q8NFF2 622 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 TRIM63Q969Q1 353 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 GRAMD2BQ96HH9 432 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 SEBOXQ9HB31 216 aaPredicted RBP3.16□□□□□ -1.9
VPS50-216ENST00000484954 ZNF334Q9HCZ1 680 aaPredicted RBP3.16□□□□□ -1.9
VPS50-216ENST00000484954 SAGE1Q9NXZ1 904 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 RRN3Q9NYV6 651 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 PADI3Q9ULW8 664 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 A4GNTQ9UNA3 340 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 SCINQ9Y6U3 715 aa3.16□□□□□ -1.9
VPS50-216ENST00000484954 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 A0A1W2PQM1 296 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 A0A1W2PS18 150 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 NR1D1P20393 614 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 FMO5P49326 533 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 RPP30P78346 268 aaKnown RBP3.15□□□□□ -1.91
VPS50-216ENST00000484954 NAE1Q13564 534 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 PRICKLE4Q2TBC4 344 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 SLC9C2Q5TAH2 1124 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 PMS2CLQ68D20 193 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 KCTD18Q6PI47 426 aaPredicted RBP3.15□□□□□ -1.91
VPS50-216ENST00000484954 RAD9BQ6WBX8 426 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 PCDH20Q8N6Y1 951 aaKnown RBP3.15□□□□□ -1.91
VPS50-216ENST00000484954 KCNH5Q8NCM2 988 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 ACVR1CQ8NER5 493 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 DMBX1Q8NFW5 382 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 PPM1EQ8WY54 764 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 ZNF501Q96CX3 271 aaPredicted RBP3.15□□□□□ -1.91
VPS50-216ENST00000484954 KIF1BPQ96EK5 621 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 APOPT1Q96IL0 206 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 SLC41A2Q96JW4 573 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 PPP1R13BQ96KQ4 1090 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 FAM110AQ9BQ89 295 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 AMDHD2Q9Y303 409 aa3.15□□□□□ -1.91
VPS50-216ENST00000484954 AKR1B15C9JRZ8 316 aaPredicted RBP3.14□□□□□ -1.91
VPS50-216ENST00000484954 IFIT1P09914 478 aaKnown RBP3.14□□□□□ -1.91
VPS50-216ENST00000484954 CD53P19397 219 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 GNAQP50148 359 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 TLE2Q04725 743 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 CAMK1Q14012 370 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 FGFBP1Q14512 234 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 ACCSLQ4AC99 568 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 CEP85LQ5SZL2 805 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 PLEKHA7Q6IQ23 1121 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 ADAM5Q6NVV9 412 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 DUS1LQ6P1R4 473 aaKnown RBP3.14□□□□□ -1.91
VPS50-216ENST00000484954 ZNF852Q6ZMS4 543 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 PQLC2Q6ZP29 291 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 ASB18Q6ZVZ8 466 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 RRM2BQ7LG56 351 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 KMT5CQ86Y97 462 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 OR5R1Q8NH85 324 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 ZCCHC10Q8TBK6 192 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms