RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ITGAVP06756 1048 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ADRB3P13945 408 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 HTR7P34969 479 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 CCNHP51946 323 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 NEK3P51956 506 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 RPL7AP62424 266 aaKnown RBP6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 SRSF3P84103 164 aaKnown RBP6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 KLHL30Q0D2K2 578 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 MAMLD1Q13495 774 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 STAT4Q14765 748 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 KLHL40Q2TBA0 621 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF284Q2VY69 593 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM72AQ5TYM5 149 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM72DQ6L9T8 149 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FBXL19Q6PCT2 694 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 TMC6Q7Z403 805 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 HORMAD1Q86X24 394 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM72BQ86X60 149 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF354CQ86Y25 554 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 PYROXD2Q8N2H3 581 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 RTL3Q8N8U3 475 aaKnown RBP6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 PNPLA1Q8N8W4 532 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 SYT8Q8NBV8 401 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ADAMTS14Q8WXS8 1223 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ARRDC3Q96B67 414 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 LRIG1Q96JA1 1093 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 SYT11Q9BT88 431 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FUCA2Q9BTY2 467 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 EDEM3Q9BZQ6 932 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 TM6SF2Q9BZW4 377 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 HAUS4Q9H6D7 363 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ZDHHC6Q9H6R6 413 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 PARVAQ9NVD7 372 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 DONSONQ9NYP3 566 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 TAS2R14Q9NYV8 317 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 AIPL1Q9NZN9 384 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 HECAQ9UBI9 543 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 FTSJ1Q9UET6 329 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 DCTN4Q9UJW0 460 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 BTBD3Q9Y2F9 522 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 ACTL7AQ9Y615 435 aa6.9□□□□□ -1.3
CCDC88A-213ENST00000476903 KMT2BQ9UMN6 2715 aaPredicted RBP6.9□□□□□ -1.31
CCDC88A-213ENST00000476903 MYLKQ15746 1914 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 CEP295Q9C0D2 2601 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 A0A1W2PQU0 124 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SYCE3A1L190 88 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 OR14I1A6ND48 311 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 EIF3CLB5ME19 914 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 RNF103O00237 685 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 KRIT1O00522 736 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SLC31A1O15431 190 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 BUB1O43683 1085 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 AP1G1O43747 822 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 RNF8O76064 485 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 GSRP00390 522 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 FTLP02792 175 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 ATXN1LP0C7T5 689 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 MYBL1P10243 752 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 GZMAP12544 262 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 PRLRP16471 622 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 PTMSP20962 102 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 HNRNPA2B1P22626 353 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 PSMA2P25787 234 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 EPHA8P29322 1005 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 AKT2P31751 481 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 PRKCIP41743 596 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 RXRGP48443 463 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 YBEYP58557 167 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 TPI1P60174 286 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SNRPD1P62314 119 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 RPS21P63220 83 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SEPT6Q14141 434 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 IQCB1Q15051 598 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SHBQ15464 509 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 VMACQ2NL98 169 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 PARP15Q460N3 678 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 ZNF805Q5CZA5 627 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 FIGNQ5HY92 759 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 PRAMEF14Q5SWL7 426 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 PLEKHA7Q6IQ23 1121 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 KIAA1161Q6NSJ0 714 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 ZNF571Q7Z3V5 609 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SLCO6A1Q86UG4 719 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 ZSCAN30Q86W11 494 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SPATS2Q86XZ4 545 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 GATAD2AQ86YP4 633 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 RYBPQ8N488 228 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 TMEM145Q8NBT3 493 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 OR2AP1Q8NGE2 309 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 OR6K2Q8NGY2 324 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SAP25Q8TEE9 199 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 FNIP1Q8TF40 1166 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 CASKIN2Q8WXE0 1202 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 RAB7BQ96AH8 199 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 FEM1CQ96JP0 617 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 GDAP1L1Q96MZ0 367 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 NAP1L5Q96NT1 182 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 EIF3CQ99613 913 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 MAGEB5Q9BZ81 275 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 FADS3Q9Y5Q0 445 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms