RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 ILF3Q12906 894 aaKnown RBP eCLIP20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 C14orf28Q4W4Y0 310 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 NCBP2-AS2Q69YL0 99 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 SPECC1LQ69YQ0 1117 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 ALG1LQ6GMV1 187 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 RAET1GQ6H3X3 334 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 FOXR1Q6PIV2 292 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 CCNJLQ8IV13 435 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 PELI3Q8N2H9 469 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 OR8K1Q8NGG5 319 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 PIH1D2Q8WWB5 315 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 PRR11Q96HE9 360 aaPredicted RBP20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 TSGA13Q96PP4 275 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 GSDMCQ9BYG8 508 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 XPO4Q9C0E2 1151 aaKnown RBP20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 DEF6Q9H4E7 631 aa20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 CARS2Q9HA77 564 aaKnown RBP20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 ZNHIT6Q9NWK9 470 aaKnown RBP20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 TRNAU1APQ9NX07 287 aaKnown RBP20.34■□□□□ 0.85
PDLIM4-206ENST00000474421 GOLGA6CA6NDK9 693 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 GOLGA6BA6NDN3 693 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 CDRT15L2A8MXV6 281 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 B4DGG1 531 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 KLK10O43240 276 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 NUDT21O43809 227 aaKnown RBP20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 FZD6O60353 706 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 NOBOXO60393 691 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 TNFSF15O95150 251 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 PYGLP06737 847 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 ITGA2BP08514 1039 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 TPM1P09493 284 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 GOLGA6DP0CG33 693 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 ZNF30P17039 623 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 MAN1A1P33908 653 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 EPHB1P54762 984 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 INHBCP55103 352 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 Q6ZVL8 140 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 CLEC14AQ86T13 490 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 GPBAR1Q8TDU6 330 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 FAF2Q96CS3 445 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 FRMD8Q9BZ67 464 aaPredicted RBP20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 RBM22Q9NW64 420 aaKnown RBP eCLIP20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 GOLGA6AQ9NYA3 693 aa20.33■□□□□ 0.85
PDLIM4-206ENST00000474421 A0A1W2PQM1 296 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 SSU72P8A0A1W2PR75 194 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 PLD2O14939 933 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 ATXN7O15265 892 aaPredicted RBP20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 ZW10O43264 779 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 CEACAM5P06731 702 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 CCNB1P14635 433 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 CTPS1P17812 591 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 CCKBRP32239 447 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 SKOR1P84550 965 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 HLTFQ14527 1009 aaKnown RBP eCLIP20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 SKOR2Q2VWA4 1001 aaPredicted RBP20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 ATP13A4Q4VNC1 1196 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 ZFYVE27Q5T4F4 411 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 TECPR1Q7Z6L1 1165 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 TSPAN33Q86UF1 283 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 NLRP8Q86W28 1048 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 RAVER1Q8IY67 606 aaKnown RBP20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 FBXO39Q8N4B4 442 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 TMEM159Q96B96 161 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 ZNF830Q96NB3 372 aaPredicted RBP20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 DNAJC7Q99615 494 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 EPB41L5Q9HCM4 733 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 LRIT1Q9P2V4 623 aa20.32■□□□□ 0.84
PDLIM4-206ENST00000474421 A0A0J9YYE9 177 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 CASC3O15234 703 aaKnown RBP20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 TRBC1P01850 177 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 IVLP07476 585 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 PDHA1P08559 390 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 TMEM253P0C7T8 217 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 GPR1P46091 355 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 RPL26P61254 145 aaKnown RBP20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 LRRC66Q68CR7 880 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 ZNF765Q7L2R6 523 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 RAB11FIP2Q7L804 512 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 SPRED1Q7Z699 444 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 B3GNT8Q7Z7M8 397 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 Q8N9G6 341 aaPredicted RBP20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 CCL4L1Q8NHW4 92 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 AP2M1Q96CW1 435 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 RPL26L1Q9UNX3 145 aaKnown RBP20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 SLC17A4Q9Y2C5 497 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 TTLL3Q9Y4R7 772 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 RNF215Q9Y6U7 377 aa20.31■□□□□ 0.84
PDLIM4-206ENST00000474421 AKR1B10O60218 316 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 GNPDA1P46926 289 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 TAS2R40P59535 323 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 DSC2Q02487 901 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 ASTE1Q2TB18 679 aaPredicted RBP20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 ADAMTSL4Q6UY14 1074 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 NRSN1Q8IZ57 195 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 ZDHHC1Q8WTX9 485 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 SLC39A7Q92504 469 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 HDAC11Q96DB2 347 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 TDRD1Q9BXT4 1180 aaKnown RBP20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 PACSIN1Q9BY11 444 aa20.3■□□□□ 0.84
PDLIM4-206ENST00000474421 FOXP3Q9BZS1 431 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms