RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 CBX6O95503 412 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CDC42P60953 191 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CBX3Q13185 183 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ITIH4Q14624 930 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 LINGO1Q96FE5 620 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TLR5O60602 858 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CTDNEP1O95476 244 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MAD2L1BPQ15013 274 aaPredicted RBP13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TRMT5Q32P41 509 aaKnown RBP13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZNF549Q6P9A3 640 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 C8orf59Q8N0T1 100 aaPredicted RBP13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SLC4A11Q8NBS3 891 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 OR7A2PQ8NGA2 310 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SLC38A3Q99624 504 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TMLHEQ9NVH6 421 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 NKIRAS2Q9NYR9 191 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CKLFQ9UBR5 152 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 KCNE2Q9Y6J6 123 aa13.25□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ERVK-21P61565 698 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 OR52E6Q96RD3 313 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ACE2Q9BYF1 805 aaPredicted RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TMEM216Q9P0N5 145 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MRPS33Q9Y291 106 aaKnown RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ANKRD6Q9Y2G4 727 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MROH7Q68CQ1 1323 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 GZMAP12544 262 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZDHHC17Q8IUH5 632 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 C12orf56Q8IXR9 622 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 C7orf61Q8IZ16 206 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZCCHC10Q8TBK6 192 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 HCAR2Q8TDS4 363 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ACP6Q9NPH0 428 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CROCC2H7BZ55 1655 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TRUB2O95900 331 aaKnown RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CST1P01037 141 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PRH1P02810 166 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 AHCYP23526 432 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SLC30A6Q6NXT4 461 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TMPRSS9Q7Z410 1059 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 GALNT5Q7Z7M9 940 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 JAZF1Q86VZ6 243 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PSTKQ8IV42 348 aaKnown RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CEP295NLQ96MC4 621 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 FKBP6O75344 327 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 GLUD1P00367 558 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CDH13P55290 713 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PTCHD4Q6ZW05 846 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZNF410Q86VK4 478 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 XAGE5Q8WWM1 108 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SPATA31A6Q5VVP1 1343 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CBFA2T3O75081 653 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 APODP05090 189 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PECAM1P16284 738 aaPredicted RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CDH3P22223 829 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ALDH4A1P30038 563 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MSX2P35548 267 aaPredicted RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CYP4F8P98187 520 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZNF280BQ86YH2 543 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PSMA8Q8TAA3 256 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 HDAC10Q969S8 669 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 OXNAD1Q96HP4 312 aaPredicted RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SGK2Q9HBY8 427 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 RDH8Q9NYR8 311 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 FKTNO75072 461 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SERPINA1P01009 418 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 PTPN4P29074 926 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ADRM1Q16186 407 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 KLHL35Q6PF15 583 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 FBXO15Q8NCQ5 510 aaPredicted RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 NELL1Q92832 810 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 COX4I2Q96KJ9 171 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MTMR9Q96QG7 549 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZNF607Q96SK3 696 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 GTPBP2Q9BX10 602 aaKnown RBP13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 NMUR1Q9HB89 426 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SLC24A2Q9UI40 661 aa13.24□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 C2orf71A6NGG8 1288 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ACKR2O00590 384 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SMIM10L2AP0DMW4 78 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SMIM10L2BP0DMW5 78 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 CHMP24386 653 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 RPL21P46778 160 aaKnown RBP13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MRPS6P82932 125 aaKnown RBP13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 SLC25A25Q6KCM7 469 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 MCCC1Q96RQ3 725 aaPredicted RBP13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 GSDMCQ9BYG8 508 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 HCN3Q9P1Z3 774 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 NRCAMQ92823 1304 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 FAM172BPA6NC97 362 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 QSOX1O00391 747 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ENPP3O14638 875 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 EPHB6O15197 1021 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 HNRNPLP14866 589 aaKnown RBP eCLIP13.23□□□□□ -0.291e-5■■■□□ 19.2
NPHP3-ACAD11-201ENST00000471702 VBP1P61758 197 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ZNF613Q6PF04 617 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 RAVER1Q8IY67 606 aaKnown RBP13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 FAM110BQ8TC76 370 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 ST3GAL5Q9UNP4 418 aa13.23□□□□□ -0.29
NPHP3-ACAD11-201ENST00000471702 TBC1D30Q9Y2I9 924 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms