RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 NAGSQ8N159 534 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 LSM14AQ8ND56 463 aaKnown RBP5.63□□□□□ -1.51
CCDC39-202ENST00000471307 ARRDC2Q8TBH0 407 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 WFIKKN2Q8TEU8 576 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 NOC3LQ8WTT2 800 aaKnown RBP5.63□□□□□ -1.51
CCDC39-202ENST00000471307 SCMH1Q96GD3 660 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 PKP4Q99569 1192 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 REEP2Q9BRK0 252 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 PTPRHQ9HD43 1115 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 ITM2CQ9NQX7 267 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 NHSL1Q5SYE7 1610 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 ALS2Q96Q42 1657 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 ROBO1Q9Y6N7 1651 aa5.63□□□□□ -1.51
CCDC39-202ENST00000471307 GOLGA6L10A0A0M3HER8 536 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 A0A0U1RQF3 1178 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 ATP2C2O75185 946 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 CD58P19256 250 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 CXCR3P49682 368 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 RUNX2Q13950 521 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 NAA25Q14CX7 972 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 ESCO2Q56NI9 601 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 PPP6R3Q5H9R7 873 aaPredicted RBP5.62□□□□□ -1.51
CCDC39-202ENST00000471307 WDR45BQ5MNZ6 344 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 BBS12Q6ZW61 710 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 LURAP1LQ8IV03 231 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 SMC5Q8IY18 1101 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 TRIM63Q969Q1 353 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 ARPC5LQ9BPX5 153 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 PNNQ9H307 717 aaKnown RBP5.62□□□□□ -1.51
CCDC39-202ENST00000471307 MROH8Q9H579 483 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 SMARCAL1Q9NZC9 954 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 MAP3K19Q56UN5 1328 aa5.62□□□□□ -1.51
CCDC39-202ENST00000471307 SMG6Q86US8 1419 aaKnown RBP5.62□□□□□ -1.51
CCDC39-202ENST00000471307 AHDC1Q5TGY3 1603 aaPredicted RBP5.62□□□□□ -1.51
CCDC39-202ENST00000471307 A0A087WYN8 130 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 RTL1A6NKG5 1358 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 NPIPB11E5RHQ5 1161 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 LINC01565O15544 149 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 SLIT3O75094 1523 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 SLC2A4P14672 509 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 HOXC9P31274 260 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 FLT4P35916 1363 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 DDR1Q08345 913 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 SLC12A1Q13621 1099 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 ARHGEF6Q15052 776 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 SETMARQ53H47 684 aaPredicted RBP5.61□□□□□ -1.51
CCDC39-202ENST00000471307 FAM122CQ6P4D5 195 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 STAMQ92783 540 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 INPP4AQ96PE3 977 aaPredicted RBP5.61□□□□□ -1.51
CCDC39-202ENST00000471307 SLC32A1Q9H598 525 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 CDK12Q9NYV4 1490 aaPredicted RBP5.61□□□□□ -1.51
CCDC39-202ENST00000471307 MALT1Q9UDY8 824 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 SLCO3A1Q9UIG8 710 aa5.61□□□□□ -1.51
CCDC39-202ENST00000471307 MARF1Q9Y4F3 1742 aaKnown RBP5.61□□□□□ -1.51
CCDC39-202ENST00000471307 CPDO75976 1380 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 PABPN1LA6NDY0 278 aaKnown RBP5.6□□□□□ -1.51
CCDC39-202ENST00000471307 HSPB2A8KAH6 182 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 KLRF2D3W0D1 207 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 BMPR1BO00238 502 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 HSPA12AO43301 675 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 SSTR2P30874 369 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 TROAPQ12815 778 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 EIF4A2Q14240 407 aaKnown RBP5.6□□□□□ -1.51
CCDC39-202ENST00000471307 HSPB2Q16082 182 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 SOWAHAQ2M3V2 549 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 MOB3CQ70IA8 216 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 ADGRG6Q86SQ4 1221 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 ZNF329Q86UD4 541 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 FAM160B2Q86V87 743 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 ZC3HC1Q86WB0 502 aaKnown RBP5.6□□□□□ -1.51
CCDC39-202ENST00000471307 MUC20Q8N307 709 aaPredicted RBP5.6□□□□□ -1.51
CCDC39-202ENST00000471307 NGEFQ8N5V2 710 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 GJC3Q8NFK1 279 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 TNIP2Q8NFZ5 429 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 HERPUD2Q9BSE4 406 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 SMYD2Q9NRG4 433 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 CARD8Q9Y2G2 431 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.6□□□□□ -1.51
CCDC39-202ENST00000471307 NFE2L3Q9Y4A8 694 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 PCDHGB3Q9Y5G1 929 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 A3GALT2U3KPV4 340 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 PHLPP1O60346 1717 aa5.6□□□□□ -1.51
CCDC39-202ENST00000471307 MED1Q15648 1581 aaPredicted RBP5.59□□□□□ -1.51
CCDC39-202ENST00000471307 NFAT5O94916 1531 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 A0A0B4J293 547 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 hDV102S1A0JD36 115 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 CLGNO14967 610 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 GUCY1B2O75343 617 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 RGS11O94810 467 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 PMS2P2O95744 297 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 ITGAXP20702 1163 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 PPFIA1Q13136 1202 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 CES5AQ6NT32 575 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 UNQ6126/PRO20091Q6UXV3 157 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 DSTYKQ6XUX3 929 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 USP43Q70EL4 1123 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 PARP16Q8N5Y8 322 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 ZC3HAV1LQ96H79 300 aaKnown RBP5.59□□□□□ -1.51
CCDC39-202ENST00000471307 UBTD1Q9HAC8 227 aa5.59□□□□□ -1.51
CCDC39-202ENST00000471307 EBF2Q9HAK2 575 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms