RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MID1IP1Q9NPA3 183 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 CACNA2D2Q9NY47 1150 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 PSMD13Q9UNM6 376 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 BTRCQ9Y297 605 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 SLC38A8A6NNN8 435 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 CDK14O94921 469 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 SERPINF2P08697 491 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 FDXRP22570 491 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 DNAJB1P25685 340 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 PRDX3P30048 256 aaKnown RBP19.08■□□□□ 0.64
VIM-203ENST00000469543 SOX11P35716 441 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 KPNA2P52292 529 aaKnown RBP19.08■□□□□ 0.64
VIM-203ENST00000469543 GNA12Q03113 381 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 GRB7Q14451 532 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 IL23RQ5VWK5 629 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 FUNDC1Q8IVP5 155 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 PRICKLE1Q96MT3 831 aaPredicted RBP19.08■□□□□ 0.64
VIM-203ENST00000469543 RNF38Q9H0F5 515 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 AKTIPQ9H8T0 292 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 EML4Q9HC35 981 aaKnown RBP19.08■□□□□ 0.64
VIM-203ENST00000469543 SEMA4BQ9NPR2 832 aaPredicted RBP19.08■□□□□ 0.64
VIM-203ENST00000469543 ASB3Q9Y575 518 aa19.08■□□□□ 0.64
VIM-203ENST00000469543 FRMPD3Q5JV73 1810 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 RNASEH2AO75792 299 aaKnown RBP19.07■□□□□ 0.64
VIM-203ENST00000469543 OR1D2P34982 312 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 HERVK_113P63132 956 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 LRP8Q14114 963 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 LARP4Q71RC2 724 aaKnown RBP eCLIP19.07■□□□□ 0.64
VIM-203ENST00000469543 PIANPQ8IYJ0 282 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 ERVK-6Q9BXR3 956 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 CATSPERZQ9NTU4 200 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 TIMM22Q9Y584 194 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 SQORQ9Y6N5 450 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 RTN3O95197 1032 aaPredicted RBP19.07■□□□□ 0.64
VIM-203ENST00000469543 PRLP01236 227 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 GALTP07902 379 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 LINC00032P0C843 101 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 PAX3P23760 479 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 GRIA2P42262 883 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 HK2P52789 917 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 LHX8Q68G74 356 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 NAIF1Q69YI7 327 aaPredicted RBP19.07■□□□□ 0.64
VIM-203ENST00000469543 REP15Q6BDI9 236 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 SCIMPQ6UWF3 145 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 DCUN1D1Q96GG9 259 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 NR1H4Q96RI1 486 aaPredicted RBP19.07■□□□□ 0.64
VIM-203ENST00000469543 TRIB3Q96RU7 358 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 TUBB1Q9H4B7 451 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 SMPD4Q9NXE4 827 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 UBAP1Q9NZ09 502 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 FNIP2Q9P278 1114 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 DTNAQ9Y4J8 743 aa19.07■□□□□ 0.64
VIM-203ENST00000469543 PLXNA3P51805 1871 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 CDC7O00311 574 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 KIF1CO43896 1103 aaKnown RBP19.06■□□□□ 0.64
VIM-203ENST00000469543 CHRM3P20309 590 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 AGTR2P50052 363 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 TBKBP1A7MCY6 615 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 IQCF5A8MTL0 148 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 H3BNC9 293 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 RPP40O75818 363 aaKnown RBP19.06■□□□□ 0.64
VIM-203ENST00000469543 ATP5C1P36542 298 aaKnown RBP19.06■□□□□ 0.64
VIM-203ENST00000469543 STC1P52823 247 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 OGFRL1Q5TC84 451 aaPredicted RBP19.06■□□□□ 0.64
VIM-203ENST00000469543 FAM45BPQ6NSW5 357 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 TMCO2Q7Z6W1 182 aaPredicted RBP19.06■□□□□ 0.64
VIM-203ENST00000469543 RETREG3Q86VR2 466 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 EFHBQ8N7U6 833 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 ICA1LQ8NDH6 482 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 FBXO22Q8NEZ5 403 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 FAM45AQ8TCE6 357 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 CCDC126Q96EE4 140 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 C19orf60Q96EN9 201 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 CCDC97Q96F63 343 aaPredicted RBP19.06■□□□□ 0.64
VIM-203ENST00000469543 RPL10LQ96L21 214 aaKnown RBP19.06■□□□□ 0.64
VIM-203ENST00000469543 LRGUKQ96M69 825 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 RIMS3Q9UJD0 308 aa19.06■□□□□ 0.64
VIM-203ENST00000469543 OR6C75A6NL08 312 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 CASQ2O14958 399 aaPredicted RBP19.05■□□□□ 0.64
VIM-203ENST00000469543 PIP5K1BO14986 540 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 COCHO43405 550 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 ACSL4O60488 711 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 HSPA1AP0DMV8 641 aaKnown RBP19.05■□□□□ 0.64
VIM-203ENST00000469543 HSPA1BP0DMV9 641 aaKnown RBP19.05■□□□□ 0.64
VIM-203ENST00000469543 GFAPP14136 432 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 YBEYP58557 167 aaPredicted RBP19.05■□□□□ 0.64
VIM-203ENST00000469543 TSNQ15631 228 aaKnown RBP19.05■□□□□ 0.64
VIM-203ENST00000469543 NRF1Q16656 503 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 GSTA3Q16772 222 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 MRNIPQ6NTE8 343 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 PSAPL1Q6NUJ1 521 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 DDIASQ8IXT1 998 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 LPCAT1Q8NF37 534 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 FEM1CQ96JP0 617 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 OLA1Q9NTK5 396 aaKnown RBP19.05■□□□□ 0.64
VIM-203ENST00000469543 ZDHHC7Q9NXF8 308 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 ASB1Q9Y576 335 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 THSD7BQ9C0I4 1608 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 C2orf78A6NCI8 922 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 TBC1D4O60343 1298 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms