RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ASCC1Q8N9N2 400 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 PYDC1Q8WXC3 89 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 KCTD7Q96MP8 289 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 SYT4Q9H2B2 425 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 DNAJC13O75165 2243 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 HMGN1P05114 100 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 RPL9P32969 192 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 MATKP42679 507 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 MFSD7Q6UXD7 560 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 NECAB2Q7Z6G3 386 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 POMGNT2Q8NAT1 580 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 SLC7A5P2Q9GIP4 190 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 POLR1EQ9GZS1 481 aaKnown RBP7.19□□□□□ -1.26
VPS53-204ENST00000437048 CCDC167Q9P0B6 97 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 UBQLN2Q9UHD9 624 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 DUOX1Q9NRD9 1551 aa7.19□□□□□ -1.26
VPS53-204ENST00000437048 PMM2O15305 246 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 DGKIO75912 1065 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 PIGNO95427 931 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 TBRG1Q3YBR2 411 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ZNF311Q5JNZ3 666 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 PIK3R6Q5UE93 754 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 DEF8Q6ZN54 512 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 CBWD2Q8IUF1 395 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 OR5T2Q8NGG2 359 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 EXOC2Q96KP1 924 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 PFDN5Q99471 154 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ADAMTS10Q9H324 1103 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 SLA2Q9H6Q3 261 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ADGRE2Q9UHX3 823 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 FARSAQ9Y285 508 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 CYP4F8P98187 520 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 SLC13A2Q13183 592 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 AFTPHQ6ULP2 937 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 MPZL3Q6UWV2 235 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 PHF13Q86YI8 300 aaPredicted RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 FAM71AQ8IYT1 594 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ELMO3Q96BJ8 720 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 MASTLQ96GX5 879 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 RERGLQ9H628 205 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 TRMT13Q9NUP7 481 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 DDIT4Q9NX09 232 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 KIAA0100Q14667 2235 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 SOX9P48436 509 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 PHC1P78364 1004 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ZNF33AQ06730 810 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 FAM76BQ5HYJ3 339 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 MEDAGQ5VYS4 303 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 MFSD14CQ5VZR4 134 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 TSPAN33Q86UF1 283 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 AGAP3Q96P47 875 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 SPATA7Q9P0W8 599 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 RBL1P28749 1068 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 RPL13AP3Q6NVV1 102 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 MOB2Q70IA6 237 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 GANCQ8TET4 914 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 TCTEX1D2Q8WW35 142 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 CENPOQ9BU64 300 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 C2orf74A8MZ97 194 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 STAG3L1P0CL83 205 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 FGFR1P11362 822 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ENDOUP21128 410 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 GLDCP23378 1020 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 NUMBP49757 651 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 USP4Q13107 963 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 AVL9Q8NBF6 648 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 DNERQ8NFT8 737 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ATXN7L3BQ96GX2 97 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 CITED4Q96RK1 184 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 CPXM1Q96SM3 734 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 LRRC3Q9BY71 257 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 EXO5Q9H790 373 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 DNAJB9Q9UBS3 223 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 TMA7Q9Y2S6 64 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 APC2O95996 2303 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 DLGAP1O14490 977 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ACSL4O60488 711 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 PSIP1O75475 530 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 IGFBP5P24593 272 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ZNF143P52747 638 aaPredicted RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 MAPK10P53779 464 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ADAM15Q13444 863 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 TAF5Q15542 800 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ARMC1Q9NVT9 282 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 IFT52Q9Y366 437 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 LRRTM2O43300 516 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 RP2O75695 350 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 UGT2B4P06133 528 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 RPS12P25398 132 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 USP45Q70EL2 814 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 METTL25Q8N6Q8 603 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 RNF149Q8NC42 400 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 THAP6Q8TBB0 222 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 CLP1Q92989 425 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 QPCTLQ9NXS2 382 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 FBXO9Q9UK97 447 aaPredicted RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 MAPK12P53778 367 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 BST1Q10588 318 aa7.18□□□□□ -1.26
VPS53-204ENST00000437048 ZC3H12AQ5D1E8 599 aaKnown RBP7.18□□□□□ -1.26
VPS53-204ENST00000437048 FGD3Q5JSP0 725 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms