RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 HACD3Q9P035 362 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 RSL24D1Q9UHA3 163 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 MYO15AQ9UKN7 3530 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 CASQ2O14958 399 aaPredicted RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 RHOBTB1O94844 696 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 CD4P01730 458 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 CNPP09543 421 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 ATP5F1P24539 256 aaPredicted RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 EEF1DP29692 281 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 THPOP40225 353 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 OR4D1Q15615 310 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 DCAF4L1Q3SXM0 396 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 KLC3Q6P597 504 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 SLC2A7Q6PXP3 512 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 TBPL2Q6SJ96 375 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 GPR141Q7Z602 305 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 GALNT5Q7Z7M9 940 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 CLEC14AQ86T13 490 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 UNC93AQ86WB7 457 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 FUNDC1Q8IVP5 155 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 EXOC8Q8IYI6 725 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 KLHDC9Q8NEP7 349 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 C12orf43Q96C57 262 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 C19orf60Q96EN9 201 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 AURKBQ96GD4 344 aaPredicted RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 PLEKHG4BQ96PX9 1271 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 SEPT5Q99719 369 aaPredicted RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 HNRNPABQ99729 332 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 TINF2Q9BSI4 451 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 NACA2Q9H009 215 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 ING2Q9H160 280 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 AGO3Q9H9G7 860 aaKnown RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 IKZF3Q9UKT9 509 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 PNMA8BQ9ULN7 279 aaPredicted RBP8.65□□□□□ -1.02
USP40-203ENST00000427112 VWA7Q9Y334 891 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 PCDHGC4Q9Y5F7 938 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 CEPT1Q9Y6K0 416 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 MYO10Q9HD67 2058 aa8.65□□□□□ -1.02
USP40-203ENST00000427112 PAPPA2Q9BXP8 1791 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 BTN3A1O00481 513 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 TMCC1O94876 653 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 POLR2IP36954 125 aaKnown RBP8.65□□□□□ -1.03
USP40-203ENST00000427112 MAGEA10P43363 369 aaPredicted RBP8.65□□□□□ -1.03
USP40-203ENST00000427112 PMS2P3Q13401 168 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 SEMA3AQ14563 771 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 LPIN1Q14693 890 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 PYCR3Q53H96 274 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 LRRC73Q5JTD7 316 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 PAGE3Q5JUK9 113 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 UBXN11Q5T124 520 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 DENND5AQ6IQ26 1287 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 ANKRD46Q86W74 232 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 CMTR2Q8IYT2 770 aaKnown RBP8.65□□□□□ -1.03
USP40-203ENST00000427112 FIBCD1Q8N539 461 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 LZTR1Q8N653 840 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 SDCCAG3Q96C92 435 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 GPR78Q96P69 363 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 SMURF2Q9HAU4 748 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 POLE4Q9NR33 117 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 IGSF5Q9NSI5 407 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 OSER1Q9NX31 292 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 SMPD4Q9NXE4 827 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 SORCS3Q9UPU3 1222 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 TCAF1Q9Y4C2 921 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 DNAJC15Q9Y5T4 150 aa8.65□□□□□ -1.03
USP40-203ENST00000427112 DNAJC25-GNG10A0A024R161 153 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 A0A0D9SEW6 157 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 ARL5CA6NH57 179 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 PCP4L1A6NKN8 68 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 FSHRP23945 695 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 ITGADQ13349 1161 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 PAFAH1B3Q15102 231 aaKnown RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 ZBTB6Q15916 424 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 INSCQ1MX18 579 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 PAQR3Q6TCH7 311 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 OR7D4Q8NG98 312 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 ZFAND2BQ8WV99 257 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 TWIST2Q8WVJ9 160 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 NCLNQ969V3 563 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 OLAHQ9NV23 265 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 RBM47A0AV96 593 aaKnown RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 DHRS12A0PJE2 317 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 GNGT2O14610 69 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 NIPSNAP2O75323 286 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 LTA4HP09960 611 aaKnown RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 OR1G1P47890 313 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 SLC26A2P50443 739 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 CLCN2P51788 898 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 MCCD1P59942 119 aaPredicted RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 STX5Q13190 355 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 TSTA3Q13630 321 aaPredicted RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 UAP1L1Q3KQV9 507 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 C10orf120Q5SQS8 335 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 LRRC52Q8N7C0 313 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 RDH11Q8TC12 318 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 MAML3Q96JK9 1138 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 SLC30A3Q99726 388 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 VRTNQ9H8Y1 702 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 ITM2CQ9NQX7 267 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 MKS1Q9NXB0 559 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms