RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 UNC5CO95185 931 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 UGT2B4P06133 528 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 CNPP09543 421 aaKnown RBP11.96□□□□□ -0.5
PTPRF-205ENST00000414879 HNRNPA1P09651 372 aaKnown RBP eCLIP11.96□□□□□ -0.5
PTPRF-205ENST00000414879 CTPS1P17812 591 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 RFTN2Q52LD8 501 aaPredicted RBP11.96□□□□□ -0.5
PTPRF-205ENST00000414879 MSANTD2Q6P1R3 559 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 PRSS55Q6UWB4 352 aaPredicted RBP11.96□□□□□ -0.5
PTPRF-205ENST00000414879 FAM151BQ6UXP7 276 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 BEND5Q7L4P6 421 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 C17orf64Q86WR6 236 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 MAGED4Q96JG8 741 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 NPY6RQ99463 290 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 APOL4Q9BPW4 351 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 AIF1LQ9BQI0 150 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 INVSQ9Y283 1065 aa11.96□□□□□ -0.5
PTPRF-205ENST00000414879 KRT8P05787 483 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 GSNP06396 782 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 ATP6V1C1P21283 382 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 HOXD13P35453 343 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 SLC18A1P54219 525 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 MAPKAPK3Q16644 382 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 BRAT1Q6PJG6 821 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 CRELD2Q6UXH1 353 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 UBE2R2Q712K3 238 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 TMEM192Q8IY95 271 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 TMEM174Q8WUU8 243 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 NELL1Q92832 810 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 OTULINQ96BN8 352 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 FAM84AQ96KN4 292 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 EXOC2Q96KP1 924 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 HOPXQ9BPY8 73 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 NUSAP1Q9BXS6 441 aaKnown RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 EVLQ9UI08 416 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 ASF1AQ9Y294 204 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 GPSM3Q9Y4H4 160 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 BACE2Q9Y5Z0 518 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 CHD4Q14839 1912 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 H3BM21 787 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 DNAJA2O60884 412 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 ZNF132P52740 706 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 PTPN5P54829 565 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 GRSF1Q12849 480 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 AP5B1Q2VPB7 878 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 XKR6Q5GH73 641 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 PPP2R2DQ66LE6 453 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 SLC9A4Q6AI14 798 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 RBM23Q86U06 439 aaKnown RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 ANKLE1Q8NAG6 615 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 SCLYQ96I15 445 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 BPIFA1Q9NP55 256 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 CCDC167Q9P0B6 97 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 SIX4Q9UIU6 781 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 HS6ST1O60243 411 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 CYBAP13498 195 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 CAPZA2P47755 286 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 TM4SF4P48230 202 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 GSTA3Q16772 222 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 CARD16Q5EG05 197 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 B3GNT9Q6UX72 402 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 ZYG11AQ6WRX3 759 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 OTOP3Q7RTS5 596 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 AHI1Q8N157 1196 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 AP2M1Q96CW1 435 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 SPAG4Q9NPE6 437 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 AASDHPPTQ9NRN7 309 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 SALL4Q9UJQ4 1053 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 PNMA8BQ9ULN7 279 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 ANGPT4Q9Y264 503 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 SLC22A2O15244 555 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 RGS20O76081 388 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 CDK14O94921 469 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 MYBL2P10244 700 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 HNRNPH1P31943 449 aaKnown RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 CLDN10P78369 228 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 DSC2Q02487 901 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 LRRC36Q1X8D7 754 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 SULT1C3Q6IMI6 304 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 TTC27Q6P3X3 843 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 FBXO46Q6PJ61 603 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-205ENST00000414879 RHBDF2Q6PJF5 856 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 ZCCHC23Q6ZST2 131 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 TRIB2Q92519 343 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 ITCHQ96J02 903 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 MIOSQ9NXC5 875 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 TRAF6Q9Y4K3 522 aa11.95□□□□□ -0.5
PTPRF-205ENST00000414879 EPOP01588 193 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TRPC1P48995 793 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SLC11A1P49279 550 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 NME5P56597 212 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ADCK1Q86TW2 530 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 GPR180Q86V85 440 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 SVOPQ8N4V2 548 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 ITFG1Q8TB96 612 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 NDNQ99608 321 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 RNF39Q9H2S5 420 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 PDLIM7Q9NR12 457 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 DNAJC28Q9NX36 388 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 COPG2Q9UBF2 871 aa11.94□□□□□ -0.5
PTPRF-205ENST00000414879 TBC1D3DA0A087WVF3 549 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms