RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 KCNH4Q9UQ05 1017 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 PCDHGB7Q9Y5F8 929 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 DIP2AQ14689 1571 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 DNTTP04053 509 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CPB1P15086 417 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 MATKP42679 507 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 STYK1Q6J9G0 422 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 C16orf46Q6P387 395 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ANKRD52Q8NB46 1076 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 SLC39A1Q9NY26 324 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 USP17L10C9JJH3 530 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 TBX1O43435 398 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 RSL1D1O76021 490 aaKnown RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 IL7P13232 177 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 IFI30P13284 250 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 POLR2LP62875 67 aaKnown RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 SLC34A3Q8N130 599 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF670Q9BS34 389 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 SYNDIG1Q9H7V2 258 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 M0QYT0 321 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ALOX15BO15296 676 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CRYZL1O95825 349 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 FABP3P05413 133 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CRATP43155 626 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 LHX1P48742 406 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ACOT2P49753 483 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CYP4F2P78329 520 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CYP4F3Q08477 520 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 SYT16Q17RD7 645 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 KCTD19Q17RG1 926 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 MARC1Q5VT66 337 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 SMG8Q8ND04 991 aaKnown RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 COG5Q9UP83 839 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 RPL36Q9Y3U8 105 aaKnown RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ANKRD26Q9UPS8 1709 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CALCAP01258 141 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ANXA3P12429 323 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 GMPSP49915 693 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 AIF1P55008 147 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 RASGEF1CQ8N431 466 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CBR4Q8N4T8 237 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 FITM2Q8N6M3 262 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ENDOVQ8N8Q3 282 aaKnown RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 FBXO6Q9NRD1 293 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CPNE3O75131 537 aaKnown RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 BPGMP07738 259 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 CCSAPQ6IQ19 270 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 OR6C70A6NIJ9 312 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 GH2P01242 217 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 PEX2P28328 305 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 SMAD1Q15797 465 aaKnown RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 MTSS1LQ765P7 747 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 SLC47A2Q86VL8 602 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 VANGL1Q8TAA9 524 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 RNF146Q9NTX7 359 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ABCA6Q8N139 1617 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ZBTB14O43829 449 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 GPRC6AQ5T6X5 926 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 GRAP2O75791 330 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 SNAPC1Q16533 368 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 PGAP1Q75T13 922 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 TRIM48Q8IWZ4 208 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 SMAD5Q99717 465 aaKnown RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 NUDT15Q9NV35 164 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ALKQ9UM73 1620 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 RIIAD1A6NNX1 92 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 RAD17O75943 681 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 S100PP25815 95 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 TLX1P31314 330 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 FOXM1Q08050 763 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 TBRG1Q3YBR2 411 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF697Q5TEC3 545 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ZYG11AQ6WRX3 759 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 TLCD1Q96CP7 247 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 RRN3P2A6NIE6 340 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 PAPSS2O95340 614 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 GNAO1P09471 354 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 FDPSP14324 419 aaKnown RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ALDH4A1P30038 563 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 TRIM28Q13263 835 aaKnown RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 DPY19L1Q2PZI1 675 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 RIT1Q92963 219 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ZSCAN5CA6NGD5 496 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 RBAK-RBAKDNI3L0D1 243 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 AZIN1O14977 448 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ERVK-10P10266 1014 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 TRAM1Q15629 374 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 ZSCAN5AQ9BUG6 496 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 FBXO44Q9H4M3 255 aa12.88□□□□□ -0.35
COL6A3-206ENST00000409809 THUMPD1Q9NXG2 353 aaKnown RBP12.88□□□□□ -0.35
COL6A3-206ENST00000409809 MYL3P08590 195 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 CYP11B2P19099 503 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 MBTD1Q05BQ5 628 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 METTL25Q8N6Q8 603 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 CIB1Q99828 191 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 PRDM5Q9NQX1 630 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 C2orf71A6NGG8 1288 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 NUDT7P0C024 238 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms