RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PDCD7Q8N8D1 485 aaKnown RBP13.46□□□□□ -0.26
LIMS1-204ENST00000409441 TSTD1Q8NFU3 115 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 HMGB4Q8WW32 186 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 CDKL2Q92772 493 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 TADA1Q96BN2 335 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 SIPA1Q96FS4 1042 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 KLHL32Q96NJ5 620 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 HHIPQ96QV1 700 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 GORASP1Q9BQQ3 440 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 OSBPL1AQ9BXW6 950 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 SMYD2Q9NRG4 433 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 VPS45Q9NRW7 570 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 ABCF3Q9NUQ8 709 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 AAR2Q9Y312 384 aaKnown RBP13.46□□□□□ -0.26
LIMS1-204ENST00000409441 RAI2Q9Y5P3 530 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 USH1CQ9Y6N9 552 aa13.46□□□□□ -0.26
LIMS1-204ENST00000409441 MUC3AQ02505 3323 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 FAM86C2PA6NEL3 165 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 C1QTNF3-AMACRE9PGA6 284 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 AP3B1O00203 1094 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 KPNA3O00505 521 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-204ENST00000409441 TRAFD1O14545 582 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-204ENST00000409441 COPEO14579 308 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 PIAS1O75925 651 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 AP2A1O95782 977 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 PYGBP11216 843 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 NDUFV2P19404 249 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 ADRA1DP25100 572 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 ETV4P43268 484 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 PSMD8P48556 350 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 TRAF2Q12933 501 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 FRG1Q14331 258 aaKnown RBP13.45□□□□□ -0.26
LIMS1-204ENST00000409441 SPRED3Q2MJR0 410 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 ZNF805Q5CZA5 627 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 ANO7Q6IWH7 933 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 KDELC2Q7Z4H8 507 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 CACUL1Q86Y37 369 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 TRIM42Q8IWZ5 723 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 PGBD3Q8N328 593 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 CAMKK1Q8N5S9 505 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 PDCD6IPQ8WUM4 868 aaKnown RBP13.45□□□□□ -0.26
LIMS1-204ENST00000409441 PPP1R2P1Q96PQ5 205 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 MLPHQ9BV36 600 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-204ENST00000409441 IQCGQ9H095 443 aaKnown RBP13.45□□□□□ -0.26
LIMS1-204ENST00000409441 C11orf16Q9NQ32 467 aa13.45□□□□□ -0.26
LIMS1-204ENST00000409441 CFAP73A6NFT4 308 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 GOLGA8RI6L899 631 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 MID1O15344 667 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 PSMD3O43242 534 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 HTRA2O43464 458 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-204ENST00000409441 SOCS5O75159 536 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 APBB3O95704 486 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 ADH1BP00325 375 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 DNTTP04053 509 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 C7P10643 843 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 C5AR1P21730 350 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 AVPR2P30518 371 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 ALDH3A1P30838 453 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 GRIA1P42261 906 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 METAP1P53582 386 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 GEMP55040 296 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 WNT3AP56704 352 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 ZBTB16Q05516 673 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 MPP3Q13368 585 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 SLC14A2Q15849 920 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 PCSK7Q16549 785 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 SPANXN3Q5MJ09 141 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 KDELC1Q6UW63 502 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 PAF1Q8N7H5 531 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 DTWD2Q8NBA8 298 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 HCAR2Q8TDS4 363 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 ACMSDQ8TDX5 336 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 KLF6Q99612 283 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-204ENST00000409441 MANSC1Q9H8J5 431 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 SLC17A7Q9P2U7 560 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 CHKBQ9Y259 395 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 PCDHB9Q9Y5E1 797 aa13.44□□□□□ -0.26
LIMS1-204ENST00000409441 C16orf96A6NNT2 1141 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 K7ESF4 209 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 KLF11O14901 512 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 RFPL1O75677 317 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 DCTN3O75935 186 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 UBOX5O94941 541 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 PGLSO95336 258 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 PRLP01236 227 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 EPOP01588 193 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 PDHA1P08559 390 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 TROVE2P10155 538 aaKnown RBP eCLIP13.43□□□□□ -0.26
LIMS1-204ENST00000409441 MGAT1P26572 445 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 SKIV2L2P42285 1042 aaKnown RBP13.43□□□□□ -0.26
LIMS1-204ENST00000409441 CDK18Q07002 472 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 BNIP1Q12981 228 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 DBN1Q16643 649 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 SPDYAQ5MJ70 313 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 ARMC12Q5T9G4 340 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 KCTD11Q693B1 232 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 TRMT10BQ6PF06 316 aaKnown RBP13.43□□□□□ -0.26
LIMS1-204ENST00000409441 KIAA1324Q6UXG2 1013 aaKnown RBP13.43□□□□□ -0.26
LIMS1-204ENST00000409441 TTC7BQ86TV6 843 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 C1orf210Q8IVY1 113 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms