RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ERVW-1Q9UQF0 538 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 HCFC2Q9Y5Z7 792 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 UBDO15205 165 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 F7P08709 466 aaPredicted RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 SLC2A4P14672 509 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 MTHFRP42898 656 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 STK19P49842 368 aaPredicted RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 TAS2R39P59534 338 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 ATP6V0D1P61421 351 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 CACNG1Q06432 222 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 DPYSQ14117 519 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PTK2BQ14289 1009 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PDK4Q16654 411 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 MSS51Q4VC12 460 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PKDCCQ504Y2 493 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 AGKQ53H12 422 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 FSTL4Q6MZW2 842 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 C22orf39Q6P5X5 142 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 ADGRD1Q6QNK2 874 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PIWIL4Q7Z3Z4 852 aaKnown RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 SERPINA9Q86WD7 417 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PIWIL2Q8TC59 973 aaKnown RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 OTUB2Q96DC9 234 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 Q9H521 79 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 USP29Q9HBJ7 922 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 KLQ9UEF7 1012 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 MRPS17Q9Y2R5 130 aaKnown RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 TNPO3Q9Y5L0 923 aaKnown RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 EP400Q96L91 3159 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 HIDE1A8MVS5 230 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 HEPACAM2A8MVW5 462 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 KDELR3O43731 214 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 UGT1A9O60656 530 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 MAGEC1O60732 1142 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 UBOX5O94941 541 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 SLC35G4P0C7Q5 338 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 CREB1P16220 341 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 SERPINB3P29508 390 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 SOAT1P35610 550 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 ZNF33AQ06730 810 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 WASHC5Q12768 1159 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 TRIM71Q2Q1W2 868 aaKnown RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 GDPD4Q6W3E5 623 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 LYSMD3Q7Z3D4 306 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 LONP2Q86WA8 852 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 RAVER1Q8IY67 606 aaKnown RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 KCNN1Q92952 543 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 PHACTR1Q9C0D0 580 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 COPS7BQ9H9Q2 264 aaPredicted RBP9.09□□□□□ -0.95
LIG4-202ENST00000405925 UGT1A7Q9HAW7 530 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 UGT1A10Q9HAW8 530 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 UGT1A8Q9HAW9 530 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 ZNF711Q9Y462 761 aa9.09□□□□□ -0.95
LIG4-202ENST00000405925 MYO18AQ92614 2054 aaKnown RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 SYNDIG1LA6NDD5 238 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 MGAT4DA6NG13 374 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 FCHO1O14526 889 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 KIAA0355O15063 1070 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 DLDP09622 509 aaKnown RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 HNRNPLP14866 589 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIG4-202ENST00000405925 UGT1A6P19224 532 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 UGT1A1P22309 533 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 UGT1A4P22310 534 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 UGT1A3P35503 534 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 UGT1A5P35504 534 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 LMAN2Q12907 356 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ITIH4Q14624 930 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 TAF1AQ15573 450 aaPredicted RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 BEND5Q7L4P6 421 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 C10orf107Q8IVU9 208 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 AGGF1Q8N302 714 aaeCLIP9.08□□□□□ -0.96
LIG4-202ENST00000405925 FNDC5Q8NAU1 212 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 SMARCD2Q92925 531 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 NXNL1Q96CM4 212 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 CEP295NLQ96MC4 621 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 FEM1AQ9BSK4 669 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ASPSCR1Q9BZE9 553 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 GID8Q9NWU2 228 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ARMCX1Q9P291 453 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ARHGAP26Q9UNA1 814 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 AURKCQ9UQB9 309 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 PCDHB1Q9Y5F3 818 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 TRIM43BA6NCK2 446 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 NR5A2O00482 541 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 NOL3O60936 208 aaKnown RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 ATF6P18850 670 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ERVFC1P60507 584 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 MSLNQ13421 630 aaPredicted RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 ZNF460Q14592 562 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 HDDC3Q8N4P3 179 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 CEP70Q8NHQ1 597 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 MAGEC3Q8TD91 643 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 DTX3LQ8TDB6 740 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 CENPIQ92674 756 aaPredicted RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 TRIM43Q96BQ3 446 aaPredicted RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 CXorf40BQ96DE9 158 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 TSGA13Q96PP4 275 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 CCDC3Q9BQI4 270 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ACAT2Q9BWD1 397 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ACSS2Q9NR19 701 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms