RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 DRD3P35462 400 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 MAXP61244 160 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 DSC2Q02487 901 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 SEMA5AQ13591 1074 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 PTK6Q13882 451 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 DHX34Q14147 1143 aaKnown RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 TRIP6Q15654 476 aaKnown RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 CST6Q15828 149 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 PARP6Q2NL67 630 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 SPDYCQ5MJ68 293 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 ITPRIPL1Q6GPH6 555 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 KDELC1Q6UW63 502 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 KDM7AQ6ZMT4 941 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 USP30Q70CQ3 517 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 PRICKLE2Q7Z3G6 844 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 DSG4Q86SJ6 1040 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 SLCO6A1Q86UG4 719 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 MMGT1Q8N4V1 131 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 OR14C36Q8NHC7 312 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 C1orf216Q8TAB5 229 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 CCDC110Q8TBZ0 833 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 DNASE2BQ8WZ79 361 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 ZNF592Q92610 1267 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 OXNAD1Q96HP4 312 aaPredicted RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 EXOC2Q96KP1 924 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 AGAP3Q96P47 875 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 OMDQ99983 421 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 SEMA3CQ99985 751 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 MLPHQ9BV36 600 aaPredicted RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 TDRD1Q9BXT4 1180 aaKnown RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 HDAC8Q9BY41 377 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 CEP41Q9BYV8 373 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 BTBD1Q9H0C5 482 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 DDX47Q9H0S4 455 aaKnown RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 SLC32A1Q9H598 525 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 ATP13A3Q9H7F0 1226 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 SEPT10Q9P0V9 454 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 PAK5Q9P286 719 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 KLHL8Q9P2G9 620 aaPredicted RBP9.24□□□□□ -0.93
VPS53-203ENST00000401468 SARDHQ9UL12 918 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 ZMIZ1Q9ULJ6 1067 aa9.24□□□□□ -0.93
VPS53-203ENST00000401468 SMG1Q96Q15 3661 aaKnown RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 A0A1W2PQ67 120 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 ERI2A8K979 691 aaKnown RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 MEN1O00255 615 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 TP73O15350 636 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 SLC7A4O43246 635 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 SUN1O94901 812 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 ECEL1O95672 775 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 ATXN1LP0C7T5 689 aaKnown RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 FTH1P19P0C7X4 201 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 C5AR1P21730 350 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 PSMB4P28070 264 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 SERPINA4P29622 427 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 OXTRP30559 389 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 FDFT1P37268 417 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 RECQLP46063 649 aaPredicted RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 SCNN1BP51168 640 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 SUOXP51687 545 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 RPL26P61254 145 aaKnown RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 RAD51Q06609 339 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 TRAF2Q12933 501 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 MPP3Q13368 585 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 TTC31Q49AM3 519 aaPredicted RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 ZNF805Q5CZA5 627 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 PIP5KL1Q5T9C9 394 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 FAM46CQ5VWP2 391 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 KIAA0895LQ68EN5 471 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 BRAT1Q6PJG6 821 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 GDPD4Q6W3E5 623 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 PID1Q7Z2X4 250 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 CEP112Q8N8E3 955 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 MNS1Q8NEH6 495 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 PIP4K2CQ8TBX8 421 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 CCHCR1Q8TD31 782 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 SEC14L1Q92503 715 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 FEM1CQ96JP0 617 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 MCCC1Q96RQ3 725 aaPredicted RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 ORAI3Q9BRQ5 295 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 SUV39H2Q9H5I1 410 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 ARNT2Q9HBZ2 717 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 FZD3Q9NPG1 666 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 EIF2B3Q9NR50 452 aaKnown RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 AASDHPPTQ9NRN7 309 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 TM7SF3Q9NS93 570 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 DNAAF2Q9NVR5 837 aaKnown RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 SUSD2Q9UGT4 822 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 FAM153AQ9UHL3 310 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 FZD4Q9ULV1 537 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 RPL26L1Q9UNX3 145 aaKnown RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 ANKRD6Q9Y2G4 727 aa9.23□□□□□ -0.93
VPS53-203ENST00000401468 AAR2Q9Y312 384 aaKnown RBP9.23□□□□□ -0.93
VPS53-203ENST00000401468 APC2O95996 2303 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 COL27A1Q8IZC6 1860 aaPredicted RBP9.22□□□□□ -0.93
VPS53-203ENST00000401468 CYSRT1A8MQ03 144 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 C1QTNF3-AMACRE9PGA6 284 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 AREL1O15033 823 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 PSMD3O43242 534 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 AP1G1O43747 822 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms