RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ASZ1Q8WWH4 475 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TUBA1CQ9BQE3 449 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 IL22Q9GZX6 179 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 FAM49AQ9H0Q0 323 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ADAMTS10Q9H324 1103 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 RHOJQ9H4E5 214 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SMURF2Q9HAU4 748 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 INTS10Q9NVR2 710 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 C14orf119Q9NWQ9 140 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CRNNQ9UBG3 495 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ADGRE2Q9UHX3 823 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 RWDD3Q9Y3V2 267 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ISPDA4D126 451 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 H0YC42 278 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 INMTO95050 263 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TCF7P36402 384 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SLC15A1P46059 708 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 NCS1P62166 190 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SEMA5AQ13591 1074 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF404Q494X3 552 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 PYDC2Q56P42 97 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 RBM48Q5RL73 367 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 FAM45BPQ6NSW5 357 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 NEPROQ6NW34 567 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CPSF7Q8N684 471 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 C12orf29Q8N999 325 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CMASQ8NFW8 434 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TEKT5Q96M29 485 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 PGLYRP2Q96PD5 576 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SMAD5Q99717 465 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF670Q9BS34 389 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 HDHD2Q9H0R4 259 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TRIM45Q9H8W5 580 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CCDC177Q9NQR7 707 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TMEM161AQ9NX61 479 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ICMTO60725 284 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CD4P01730 458 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CNPP09543 421 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 LTA4HP09960 611 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ACO1P21399 889 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 PRKACGP22612 351 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 GLDCP23378 1020 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 GPD2P43304 727 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SRP54P61011 504 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SMUG1Q53HV7 270 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TTC23LQ6PF05 361 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 BRSK2Q8IWQ3 736 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 EMID1Q96A84 441 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ROPN1LQ96C74 230 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 PAWRQ96IZ0 340 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 EMILIN2Q9BXX0 1053 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 B3GNT5Q9BYG0 378 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 RBM38Q9H0Z9 239 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TRIT1Q9H3H1 467 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 DDIT4Q9NX09 232 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 VPS4AQ9UN37 437 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 GON4LQ3T8J9 2241 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 BBIP1A8MTZ0 92 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 PLOD3O60568 738 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 IPO13O94829 963 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TSPAN19P0C672 248 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SLC2A4P14672 509 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CPB1P15086 417 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 NFKB1P19838 968 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ATP6V1E1P36543 226 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 GRIK1P39086 918 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SLC6A3Q01959 620 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 LAPTM5Q13571 262 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SPCS2Q15005 226 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 DESI1Q6ICB0 168 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 FAM131AQ6UXB0 335 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TIFABQ6ZNK6 161 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 AMIGO1Q86WK6 493 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CMTR2Q8IYT2 770 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 DCBLD1Q8N8Z6 715 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TMEM102Q8N9M5 508 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TPD52L3Q96J77 140 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 VPS35Q96QK1 796 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 RBM4BQ9BQ04 359 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 RBM4Q9BWF3 364 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 C2orf40Q9H1Z8 148 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ABCB9Q9NP78 766 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CCM2LQ9NUG4 571 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 GIMAP2Q9UG22 337 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 SCAF8Q9UPN6 1271 aaKnown RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TCAF1Q9Y4C2 921 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 UGT2A1Q9Y4X1 527 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 HSPB11Q9Y547 144 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TIMM22Q9Y584 194 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 C10orf71Q711Q0 1435 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.3□□□□□ -0.92
COL28A1-201ENST00000399429 AZIN1O14977 448 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 PSMD3O43242 534 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 DLX3O60479 287 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 TXNP10599 105 aaKnown RBP9.3□□□□□ -0.92
COL28A1-201ENST00000399429 MLNP12872 115 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 PRKACAP17612 351 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 CHRM3P20309 590 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 PPM1FP49593 454 aaPredicted RBP9.3□□□□□ -0.92
COL28A1-201ENST00000399429 SLC25A11Q02978 314 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms