RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 BPIP17213 487 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 RABIFP47224 123 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 WSCD2Q2TBF2 565 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 WDR45BQ5MNZ6 344 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 MACC1Q6ZN28 852 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 LPCAT2Q7L5N7 544 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 SYT12Q8IV01 421 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 MREGQ8N565 214 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 FAM160A2Q8N612 972 aaPredicted RBP7□□□□□ -1.29
LIMA1-202ENST00000394943 DHRS4Q9BTZ2 278 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 C1QTNF7Q9BXJ2 289 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 P2RY12Q9H244 342 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 SUSD2Q9UGT4 822 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 CHKBQ9Y259 395 aa7□□□□□ -1.29
LIMA1-202ENST00000394943 DNAJC6O75061 913 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 TM7SF2O76062 418 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 IL1BP01584 269 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 TUBBP07437 444 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 ACADMP11310 421 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 OGNP20774 298 aaKnown RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 ATP5DP30049 168 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 C2orf54Q08AI8 447 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 ITIH4Q14624 930 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 LRRC66Q68CR7 880 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 WASH2PQ6VEQ5 465 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 LEKR1Q6ZMV7 388 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 ZNF366Q8N895 744 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 NOA1Q8NC60 698 aaKnown RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 HMGB4Q8WW32 186 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 FICDQ9BVA6 458 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 ANKZF1Q9H8Y5 726 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 WASH6PQ9NQA3 447 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 RAB6BQ9NRW1 208 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 PKD2L2Q9NZM6 624 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 CORO1CQ9ULV4 474 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 PCDHB9Q9Y5E1 797 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 CCDC189A1A4V9 331 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 CTAGE15A4D2H0 777 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 A6NNZ2 444 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 WNT9AO14904 365 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 VEGFDO43915 354 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 TCEA3O75764 348 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 AP2A2O94973 939 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 CTAGE8P0CG41 777 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 MYCLP1P12525 358 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 LPOP22079 712 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 HADHAP40939 763 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 SLC14A1Q13336 389 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 CSRP2Q16527 193 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 DUOXA1Q1HG43 343 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 DNAJC21Q5F1R6 531 aaKnown RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 SPANXN3Q5MJ09 141 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 AGAP9Q5VTM2 703 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 CTAGE6Q86UF2 777 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 CTAGE4Q8IX94 777 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 PDCD7Q8N8D1 485 aaKnown RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 LRRN4Q8WUT4 740 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 TCF12Q99081 682 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 KRT12Q99456 494 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 EBNA1BP2Q99848 306 aaKnown RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 OMDQ99983 421 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 FAM118BQ9BPY3 351 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 LRRC1Q9BTT6 524 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 UCK1Q9HA47 277 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 ZFYVE1Q9HBF4 777 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 TM9SF3Q9HD45 589 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 GPR34Q9UPC5 381 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 THADAQ6YHU6 1953 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 A0A1B0GTW7 788 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 TTC24A2A3L6 582 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 RAD51BO15315 384 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 PCDHGA12O60330 932 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 MAGEC1O60732 1142 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 SPAG6O75602 509 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 PGAM1P18669 254 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 WASP42768 502 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 SARNPP82979 210 aaKnown RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 GPS1Q13098 491 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 IRF4Q15306 451 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 ACCSLQ4AC99 568 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 CCDC181Q5TID7 509 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 FBXL19Q6PCT2 694 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 SLC26A11Q86WA9 606 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 LRRC6Q86X45 466 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 SPATS2Q86XZ4 545 aaKnown RBP6.99□□□□□ -1.29
LIMA1-202ENST00000394943 SLC22A18ASQ8N1D0 253 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 GPR26Q8NDV2 337 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 NUS1Q96E22 293 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 EXOC2Q96KP1 924 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 IL26Q9NPH9 171 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 DYRK4Q9NR20 520 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 APPL1Q9UKG1 709 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 COMMD10Q9Y6G5 202 aa6.99□□□□□ -1.29
LIMA1-202ENST00000394943 SPTY2D1-AS1A0A0U1RR47 76 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 A0A1W2PQU0 124 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 A6NCN8 305 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 SDR42E2A6NKP2 422 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 SPAM1P38567 509 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 POLD2P49005 469 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms