RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 Q6ZVU0 165 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 MARK2Q7KZI7 788 aaKnown RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 MDGA1Q8NFP4 955 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 FAM131CQ96AQ9 280 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 SPACA7Q96KW9 195 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 AGAP3Q96P47 875 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 FAM111AQ96PZ2 611 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 SRPK1Q96SB4 655 aaKnown RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 IL12RB2Q99665 862 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 POLR1EQ9GZS1 481 aaKnown RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 GBA3Q9H227 469 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 MKS1Q9NXB0 559 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 USP36Q9P275 1121 aaKnown RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 DKK3Q9UBP4 350 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 ERI2A8K979 691 aaKnown RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 DNAJC8O75937 253 aaPredicted RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 UBOX5O94941 541 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 NDUFV2P19404 249 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 COL9A1P20849 921 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 NFKBIAP25963 317 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 CCNHP51946 323 aaPredicted RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 RPS14P62263 151 aaKnown RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 MGAT5Q09328 741 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 NIPAL4Q0D2K0 466 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 SLC10A7Q0GE19 358 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 NAB1Q13506 487 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 TEX44Q53QW1 395 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 ANO7Q6IWH7 933 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 OTOAQ7RTW8 1153 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 PACS2Q86VP3 889 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 UNC5BQ8IZJ1 945 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 CNPY4Q8N129 248 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 STK40Q8N2I9 435 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 PGBD3Q8N328 593 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 HMGB4Q8WW32 186 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 CDKL2Q92772 493 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 RAB7BQ96AH8 199 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 HHIPQ96QV1 700 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 NUDCD1Q96RS6 583 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 HDAC8Q9BY41 377 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 ATP13A3Q9H7F0 1226 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 MANSC1Q9H8J5 431 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 SGK2Q9HBY8 427 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 LHX3Q9UBR4 397 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 GGT7Q9UJ14 662 aa10.23□□□□□ -0.77
VPS53-202ENST00000389040 FCF1Q9Y324 198 aaKnown RBP10.23□□□□□ -0.77
VPS53-202ENST00000389040 MYO18AQ92614 2054 aaKnown RBP10.22□□□□□ -0.77
VPS53-202ENST00000389040 HMX2A2RU54 273 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 ANTXRLA6NF34 631 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 LILRB5O75023 590 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 SOCS5O75159 536 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 POLBP06746 335 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 SLC8A1P32418 973 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 CD68P34810 354 aaPredicted RBP10.22□□□□□ -0.77
VPS53-202ENST00000389040 P2RY2P41231 377 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 POLR2LP62875 67 aaKnown RBP10.22□□□□□ -0.77
VPS53-202ENST00000389040 OLIG2Q13516 323 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 GALNTL6Q49A17 601 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 SPANXN3Q5MJ09 141 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 MROH9Q5TGP6 573 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 FBXW10Q5XX13 1052 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 KCTD11Q693B1 232 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 ARHGAP36Q6ZRI8 547 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 CDHR3Q6ZTQ4 885 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 FITM2Q8N6M3 262 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 OR52K1Q8NGK4 314 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 GAB3Q8WWW8 586 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 TEKT5Q96M29 485 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 MLPHQ9BV36 600 aaPredicted RBP10.22□□□□□ -0.77
VPS53-202ENST00000389040 ZDHHC4Q9NPG8 344 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 DYRK4Q9NR20 520 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 RBM22Q9NW64 420 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS53-202ENST00000389040 C2orf42Q9NWW7 574 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 PLLPQ9Y342 182 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 USH1CQ9Y6N9 552 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 ZDBF2Q9HCK1 2354 aa10.22□□□□□ -0.77
VPS53-202ENST00000389040 USP12O75317 370 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 IL1BP01584 269 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 JCHAINP01591 159 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 NFKB1P19838 968 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 CR2P20023 1033 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 ITGB7P26010 798 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 SERPINA4P29622 427 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 DPP6P42658 865 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 SERPINB4P48594 390 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 TPMTP51580 245 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 ZNF805Q5CZA5 627 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 NEK5Q6P3R8 708 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 ZNF449Q6P9G9 518 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 BRAT1Q6PJG6 821 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 PACS1Q6VY07 963 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 GDPD4Q6W3E5 623 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 TIFABQ6ZNK6 161 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 MMAAQ8IVH4 418 aaKnown RBP10.21□□□□□ -0.77
VPS53-202ENST00000389040 ZNF366Q8N895 744 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 CADM4Q8NFZ8 388 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 PIP4K2CQ8TBX8 421 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 THOC1Q96FV9 657 aaKnown RBP10.21□□□□□ -0.77
VPS53-202ENST00000389040 ZC3H10Q96K80 434 aaKnown RBP10.21□□□□□ -0.77
VPS53-202ENST00000389040 OMDQ99983 421 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms