RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 FUBP1Q96AE4 644 aaKnown RBP13.35□□□□□ -0.27
VPS28-202ENST00000377348 MS4A14Q96JA4 679 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 AGAP2Q99490 1192 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 APOL2Q9BQE5 337 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 LGR4Q9BXB1 951 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 ABCG8Q9H221 673 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 TCEAL2Q9H3H9 227 aaPredicted RBP13.35□□□□□ -0.27
VPS28-202ENST00000377348 UCKL1Q9NWZ5 548 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 GOLGA6AQ9NYA3 693 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 SMARCAL1Q9NZC9 954 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 ZNF148Q9UQR1 794 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 ZNF711Q9Y462 761 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 PCDHGB2Q9Y5G2 931 aa13.35□□□□□ -0.27
VPS28-202ENST00000377348 SCAMP1O15126 338 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 USP12O75317 370 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 GCATO75600 419 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 ANXA9O76027 345 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 IFNB1P01574 187 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 ITGAVP06756 1048 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 ETS1P14921 441 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 CSRP1P21291 193 aaKnown RBP13.34□□□□□ -0.27
VPS28-202ENST00000377348 PTK2BQ14289 1009 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 PRPSAP1Q14558 356 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 NFATC4Q14934 902 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 SUZ12Q15022 739 aaKnown RBP13.34□□□□□ -0.27
VPS28-202ENST00000377348 SLC1A5Q15758 541 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 PPM1JQ5JR12 505 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 RAET1GQ6H3X3 334 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 ENPP7Q6UWV6 458 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 MACC1Q6ZN28 852 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 RBFAQ8N0V3 343 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 C17orf53Q8N3J3 647 aaPredicted RBP13.34□□□□□ -0.27
VPS28-202ENST00000377348 RHBDD1Q8TEB9 315 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 COG1Q8WTW3 980 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 TSACCQ96A04 125 aaPredicted RBP13.34□□□□□ -0.27
VPS28-202ENST00000377348 AP2M1Q96CW1 435 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 WDR24Q96S15 920 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 RIOK2Q9BVS4 552 aaKnown RBP13.34□□□□□ -0.27
VPS28-202ENST00000377348 FSD1LQ9BXM9 530 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 FRMD8P1Q9BZ68 369 aaPredicted RBP13.34□□□□□ -0.27
VPS28-202ENST00000377348 WDR26Q9H7D7 661 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 ZFYVE1Q9HBF4 777 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 MAGEE1Q9HCI5 957 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 PCOLCE2Q9UKZ9 415 aa13.34□□□□□ -0.27
VPS28-202ENST00000377348 TMEM202A6NGA9 273 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 TOR1BO14657 336 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 YKT6O15498 198 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 FLRT2O43155 660 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 CBFA2T3O75081 653 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 ZNF189O75820 626 aaPredicted RBP13.33□□□□□ -0.28
VPS28-202ENST00000377348 EPOP01588 193 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 CSF2P04141 144 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 NME1P15531 152 aaKnown RBP13.33□□□□□ -0.28
VPS28-202ENST00000377348 TSHRP16473 764 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 JUNDP17535 347 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 HLA-DPA1P20036 260 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 ADRA1AP35348 466 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 TRIM23P36406 574 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 TNNT3P45378 269 aaPredicted RBP13.33□□□□□ -0.28
VPS28-202ENST00000377348 KCNJ1P48048 391 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 GNG11P61952 73 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 TCEA2Q15560 299 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 CCNG2Q16589 344 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 PARP6Q2NL67 630 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 KANSL1Q7Z3B3 1105 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 HEATR4Q86WZ0 1026 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 PHACTR4Q8IZ21 702 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 SLC25A45Q8N413 288 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 RASGEF1CQ8N431 466 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 GLIS1Q8NBF1 620 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 CCHCR1Q8TD31 782 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 RTP4Q96DX8 246 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 PBKQ96KB5 322 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 OSBPL9Q96SU4 736 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 GPR63Q9BZJ6 419 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 SLC32A1Q9H598 525 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 BPIFA1Q9NP55 256 aa13.33□□□□□ -0.28
VPS28-202ENST00000377348 AAR2Q9Y312 384 aaKnown RBP13.33□□□□□ -0.28
VPS28-202ENST00000377348 NCOR2Q9Y618 2525 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 SPAARA0A1B0GVQ0 90 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 CACNB4O00305 520 aaPredicted RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 ZNF185O15231 689 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 BUD23O43709 281 aaKnown RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 PIAS2O75928 621 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 SOD1P00441 154 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 FGF1P05230 155 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 ZSCAN5DPP0CG00 497 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 DGKAP23743 735 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 MSNP26038 577 aaKnown RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 HTR1BP28222 390 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 STIP1P31948 543 aaKnown RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 GPR1P46091 355 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 SPINT3P49223 89 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 KIAA1024LP59773 190 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 HNRNPKP61978 463 aaKnown RBP eCLIP13.32□□□□□ -0.285e-6■□□□□ 11.2
VPS28-202ENST00000377348 CDK3Q00526 305 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 DPTQ07507 201 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 C1orf61Q13536 156 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 ALG11Q2TAA5 492 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 P3H1Q32P28 736 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms