RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 POU6F1Q14863 301 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 GSTA3Q16772 222 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 PITRM1Q5JRX3 1037 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 RALGPS1Q5JS13 557 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 N4BP2L1Q5TBK1 243 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 CES4AQ5XG92 561 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 MBLAC2Q68D91 279 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 AAGABQ6PD74 315 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 VITQ6UXI7 678 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 TMEM135Q86UB9 458 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 C12orf40Q86WS4 652 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 MSLNLQ96KJ4 702 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 ZNF184Q99676 751 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 EBF3Q9H4W6 596 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 POMKQ9H5K3 350 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 SLC25A13Q9UJS0 675 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 DNAJC16Q9Y2G8 782 aa13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 ARIH1Q9Y4X5 557 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-201ENST00000360718 LOC285095A0A1B0GVY8 99 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 FGF1P05230 155 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 PABPC1P11940 636 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 ANPEPP15144 967 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 STK19P49842 368 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 IRX4P78413 519 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 SULT2A1Q06520 285 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 C1orf146Q5VVC0 180 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 TMEM215Q68D42 235 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 CES3Q6UWW8 571 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 RIPOR1Q6ZS17 1223 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 ZCCHC23Q6ZST2 131 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 MYLK4Q86YV6 388 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 UNC5BQ8IZJ1 945 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 LRCH3Q96II8 777 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 RPL10LQ96L21 214 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 RIPOR3Q96MK2 946 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 KIFC1Q9BW19 673 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 C20orf27Q9GZN8 174 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 TRPV4Q9HBA0 871 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 LHX3Q9UBR4 397 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 TPP1O14773 563 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 NFATC1O95644 943 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 ADH5P11766 374 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 IGFBP4P22692 258 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 LAMB3Q13751 1172 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 PDE1CQ14123 709 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 SEPT6Q14141 434 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 COL19A1Q14993 1142 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 GAB4Q2WGN9 574 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 ANKRD20A4Q4UJ75 823 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 SIRPB2Q5JXA9 342 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 TEDDM1Q5T9Z0 273 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 GRTP1Q5TC63 336 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 PKN3Q6P5Z2 889 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 SREK1Q8WXA9 508 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 CERS2Q96G23 380 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 FAM83CQ9BQN1 747 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 RPP25Q9BUL9 199 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 MRM3Q9HC36 420 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 ZFP14Q9HCL3 533 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 CHRAC1Q9NRG0 131 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 DNAJC28Q9NX36 388 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 NDE1Q9NXR1 346 aa13.18□□□□□ -0.3
SQSTM1-201ENST00000360718 HEATR9A2RTY3 570 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 ZNF821O75541 412 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 NDST3O95803 873 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 ALDOAP04075 364 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 ITGA2BP08514 1039 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 FGF3P11487 239 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 PAMP19021 973 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 TYK2P29597 1187 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 GP5P40197 560 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 FRG1Q14331 258 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 CCDC153Q494R4 210 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 ATXN7L2Q5T6C5 722 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 C16orf46Q6P387 395 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 ADIPOR2Q86V24 386 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 FGF14Q92915 247 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 ZNF778Q96MU6 729 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 NR1H4Q96RI1 486 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 EBF4Q9BQW3 602 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 HPS4Q9NQG7 708 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 DLGAP2Q9P1A6 1054 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 SLC7A8Q9UHI5 535 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 TCAF1Q9Y4C2 921 aa13.17□□□□□ -0.3
SQSTM1-201ENST00000360718 EIF4E1BA6NMX2 242 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 GSRP00390 522 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 POLR2EP19388 210 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 POU3F3P20264 500 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 MAPK8P45983 427 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 MSLNQ13421 630 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 UBAP2LQ14157 1087 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 GRM2Q14416 872 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 SMAD1Q15797 465 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 GEN1Q17RS7 908 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 NAIF1Q69YI7 327 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 PARM1Q6UWI2 310 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 ADGRG6Q86SQ4 1221 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 RASSF3Q86WH2 238 aa13.16□□□□□ -0.3
SQSTM1-201ENST00000360718 AHI1Q8N157 1196 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms