RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 RFTN1Q14699 578 aaPredicted RBP13.83□□□□□ -0.2
VPS29-201ENST00000360579 MIIPQ5JXC2 388 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 ANKS6Q68DC2 871 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 CEACAM20Q6UY09 585 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 HEATR4Q86WZ0 1026 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 NAGSQ8N159 534 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 TSEN2Q8NCE0 465 aaKnown RBP13.83□□□□□ -0.2
VPS29-201ENST00000360579 C3orf20Q8ND61 904 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 SLC30A5Q8TAD4 765 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 MIB2Q96AX9 1013 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 RTP4Q96DX8 246 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 AHCYL2Q96HN2 611 aaKnown RBP13.83□□□□□ -0.2
VPS29-201ENST00000360579 COQ10AQ96MF6 247 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 CINPQ9BW66 212 aaPredicted RBP13.83□□□□□ -0.2
VPS29-201ENST00000360579 FRMD8Q9BZ67 464 aaPredicted RBP13.83□□□□□ -0.2
VPS29-201ENST00000360579 OCIAD1Q9NX40 245 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 PDP2Q9P2J9 529 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 FZD10Q9ULW2 581 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 SUFUQ9UMX1 484 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 PLAAQ9Y263 795 aa13.83□□□□□ -0.2
VPS29-201ENST00000360579 ZFC3H1O60293 1989 aaKnown RBP13.82□□□□□ -0.2
VPS29-201ENST00000360579 UTP20O75691 2785 aaKnown RBP13.82□□□□□ -0.2
VPS29-201ENST00000360579 PRR19A6NJB7 356 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 TRAFD1O14545 582 aaPredicted RBP13.82□□□□□ -0.2
VPS29-201ENST00000360579 PPM1DO15297 605 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 DUX1O43812 170 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 CALB1P05937 261 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 IVLP07476 585 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 MPSTP25325 297 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 TEAD1P28347 426 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 CSF2RBP32927 897 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 RGRP47804 291 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 PPM1FP49593 454 aaPredicted RBP13.82□□□□□ -0.2
VPS29-201ENST00000360579 RENBPP51606 427 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 ZNF143P52747 638 aaPredicted RBP13.82□□□□□ -0.2
VPS29-201ENST00000360579 COPB1P53618 953 aaKnown RBP13.82□□□□□ -0.2
VPS29-201ENST00000360579 TPI1P60174 286 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 CDK3Q00526 305 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 FMO1Q01740 532 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 DEFB109BQ30KR1 87 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 WDR59Q6PJI9 974 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 KDELC2Q7Z4H8 507 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 PELI3Q8N2H9 469 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 BMPERQ8N8U9 685 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 OR10G6Q8NH81 332 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 SLC20A1Q8WUM9 679 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 PATE1Q8WXA2 126 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 SPRY4Q9C004 299 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 ADAM22Q9P0K1 906 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 B4GALT6Q9UBX8 382 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 SLC17A4Q9Y2C5 497 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 KCTD3Q9Y597 815 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 ANKRD36A6QL64 1941 aa13.82□□□□□ -0.2
VPS29-201ENST00000360579 SPTBN1Q01082 2364 aaKnown RBP13.81□□□□□ -0.2
VPS29-201ENST00000360579 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.81□□□□□ -0.2
VPS29-201ENST00000360579 SIGLEC16A6NMB1 481 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 A8MX80 341 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 EIF3CLB5ME19 914 aaKnown RBP13.81□□□□□ -0.2
VPS29-201ENST00000360579 CCP110O43303 1012 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 GFPT2O94808 682 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 FUCA1P04066 466 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 TCN2P20062 427 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 ADCY8P40145 1251 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 ACTR1BP42025 376 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 FASLGP48023 281 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 PAPOLAP51003 745 aaKnown RBP13.81□□□□□ -0.2
VPS29-201ENST00000360579 ACTR1AP61163 376 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 MC2RQ01718 297 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 WDR74Q6RFH5 385 aaPredicted RBP13.81□□□□□ -0.2
VPS29-201ENST00000360579 TEX19Q8NA77 164 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 STARD8Q92502 1023 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 CELF6Q96J87 481 aaKnown RBP13.81□□□□□ -0.2
VPS29-201ENST00000360579 EIF3CQ99613 913 aaKnown RBP13.81□□□□□ -0.2
VPS29-201ENST00000360579 SLC38A3Q99624 504 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 SP110Q9HB58 689 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 FBXO8Q9NRD0 319 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 TMEM9Q9P0T7 183 aa13.81□□□□□ -0.2
VPS29-201ENST00000360579 TMEM184BQ9Y519 407 aaPredicted RBP13.81□□□□□ -0.2
VPS29-201ENST00000360579 ARHGEF17Q96PE2 2063 aaPredicted RBP13.8□□□□□ -0.2
VPS29-201ENST00000360579 LOC101059948A0A1B0GTJ6 334 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 MKRN2OSH3BPM6 223 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 PSMD11O00231 422 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 SOCS5O75159 536 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 HEXIM1O94992 359 aaKnown RBP13.8□□□□□ -0.2
VPS29-201ENST00000360579 CYP2A6P11509 494 aaPredicted RBP13.8□□□□□ -0.2
VPS29-201ENST00000360579 UNGP13051 313 aaPredicted RBP13.8□□□□□ -0.2
VPS29-201ENST00000360579 CHRNB2P17787 502 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 OAS2P29728 719 aaKnown RBP13.8□□□□□ -0.2
VPS29-201ENST00000360579 VIPR1P32241 457 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 SCNN1BP51168 640 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 PTP4A2Q12974 167 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 LRP8Q14114 963 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 CNGA3Q16281 694 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 RAET1GQ6H3X3 334 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 PHF13Q86YI8 300 aaPredicted RBP13.8□□□□□ -0.2
VPS29-201ENST00000360579 LZTR1Q8N653 840 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 ESX1Q8N693 406 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 DTD2Q96FN9 168 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 SCARF2Q96GP6 870 aaPredicted RBP13.8□□□□□ -0.2
VPS29-201ENST00000360579 PSKH2Q96QS6 385 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms