RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ANKRD65E5RJM6 399 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 E7EVH7 732 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 INO80B-WBP1J3KQ70 363 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 M0QYV0 167 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ITM2AO43736 263 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 GRAP2O75791 330 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SEC24AO95486 1093 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TSPAN12O95859 305 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 IL18BPO95998 194 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 LRG1P02750 347 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 KLKB1P03952 638 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 JUNP05412 331 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 DBHP09172 617 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 KRT5P13647 590 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 AKR1A1P14550 325 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ARSAP15289 507 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ACAT1P24752 427 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 DNAJB1P25685 340 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ELK3P41970 407 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 BRCC3P46736 316 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SLC6A11P48066 632 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 MTNR1BP49286 362 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 RGS7P49802 495 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CPT1AP50416 773 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ACLYP53396 1101 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 BCAT1P54687 386 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CAV1Q03135 178 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZNF33AQ06730 810 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ADIGQ0VDE8 80 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PDE1CQ14123 709 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 PTK2BQ14289 1009 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PDK2Q15119 407 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CRY1Q16526 586 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 KBTBD12Q3ZCT8 623 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZNF789Q5FWF6 425 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZNF667Q5HYK9 610 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CEP85LQ5SZL2 805 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PPP1R2P3Q6NXS1 205 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZNF549Q6P9A3 640 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 OVCH2Q7RTZ1 564 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 DPP9Q86TI2 863 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CXorf67Q86X51 503 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 ERICH1Q86X53 443 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 DEFB106AQ8N104 65 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 UBL4BQ8N7F7 174 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 FAM71DQ8N9W8 422 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TMEM35BQ8NCS4 154 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 FBXO36Q8NEA4 188 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 IRGQQ8WZA9 623 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 FAM136AQ96C01 138 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 RBM41Q96IZ5 413 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 C1orf74Q96LT6 269 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 C9orf72Q96LT7 481 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 MAGEB18Q96M61 343 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ZSWIM3Q96MP5 696 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 RBM15Q96T37 977 aaKnown RBP eCLIP2.35□□□□□ -2.037e-10■■■■□ 20.1
VPS54-202ENST00000354504 SOX7Q9BT81 388 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 INO80BQ9C086 356 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 RNF32Q9H0A6 362 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 ELAC1Q9H777 363 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 FAM49BQ9NUQ9 324 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TAGLN3Q9UI15 199 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SLC24A2Q9UI40 661 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 LNPEPQ9UIQ6 1025 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 UBQLN1Q9UMX0 589 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 RRP15Q9Y3B9 282 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 HS3ST4Q9Y661 456 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 HEATR5BQ9P2D3 2071 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 GMNCA6NCL1 334 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SDR42E2A6NKP2 422 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SHISA7A6NL88 538 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 AGAP14A8MT82 685 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 UBFD1O14562 309 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 CYB561D2O14569 222 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 IRAK2O43187 625 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 KLHL18O94889 574 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 APOL3O95236 402 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MLNP12872 115 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 CPEP16870 476 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 TYMPP19971 482 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ADRA1BP35368 520 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 GCKP35557 465 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 RGS2P41220 211 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SCNN1GP51170 649 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 DNA2P51530 1060 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 AIF1P55008 147 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 INHBEP58166 350 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 GNGT1P63211 74 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 GBX1Q14549 363 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 GPR19Q15760 415 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 CR1LQ2VPA4 569 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SLC8B1Q6J4K2 584 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 CXorf57Q6NSI4 855 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 ARHGEF18Q6ZSZ5 1173 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 GAREM2Q75VX8 874 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 PNPLA5Q7Z6Z6 429 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 TICAM1Q8IUC6 712 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 CEP97Q8IW35 865 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ZBTB8OSQ8IWT0 167 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms