RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ADGRD2Q7Z7M1 963 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 CPSF7Q8N684 471 aaKnown RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 RCN3Q96D15 328 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 GFM1Q96RP9 751 aaKnown RBP12.61□□□□□ -0.39
COL6A3-203ENST00000353578 PLA2G12BQ9BX93 195 aa12.61□□□□□ -0.39
COL6A3-203ENST00000353578 USP17L3A6NCW0 530 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 USP17L4A6NCW7 530 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ARCN1P48444 511 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 LMBRD2Q68DH5 695 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 PAOXQ6QHF9 649 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 USP17L1Q7RTZ2 530 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 GON7Q9BXV9 100 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CCDC86Q9H6F5 360 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 RAP2AP10114 183 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 RGS7P49802 495 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 IDNKQ5T6J7 187 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF772Q68DY9 489 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 MILR1Q7Z6M3 343 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 C1GALT1C1Q96EU7 318 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 RIOK2Q9BVS4 552 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 SLAIN2Q9P270 581 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 OGDHLQ9ULD0 1010 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 PRR12Q9ULL5 1215 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 SRPRAP08240 638 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 PHKG2P15735 406 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CES1P23141 567 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ITGA3P26006 1051 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ARPP19P56211 112 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 RAB12Q6IQ22 244 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 UTS2BQ765I0 119 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF335Q9H4Z2 1342 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CPS1P31327 1500 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 MERTKQ12866 999 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ARSHQ5FYA8 562 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 LRRN4CLQ8ND94 238 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CERS2Q96G23 380 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 SERPINB11Q96P15 392 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 NMUR2Q9GZQ4 415 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 FN3KQ9H479 309 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 THUMPD1Q9NXG2 353 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CLEC11AQ9Y240 323 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ABCB7O75027 752 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ACO1P21399 889 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 TKFCQ3LXA3 575 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF470Q6ECI4 717 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 PLEKHG7Q6ZR37 379 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 UBE2J2Q8N2K1 259 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 OXR1Q8N573 874 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CSGALNACT1Q8TDX6 532 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 TAS2R3Q9NYW6 316 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ENTPD4Q9Y227 616 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 POFUT2Q9Y2G5 429 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 HEG1Q9ULI3 1381 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 NARSO43776 548 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 OR5F1O95221 314 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 LIMK2P53671 638 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 LSM3P62310 102 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ACSM2AQ08AH3 577 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 DPYSL3Q14195 570 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ACSM2BQ68CK6 577 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 OOSP2Q86WS3 158 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 SPIRE2Q8WWL2 714 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 NLNQ9BYT8 704 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 RETREG1Q9H6L5 497 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CNTNAP5Q8WYK1 1306 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CSDE1O75534 798 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 HOXC6P09630 235 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 DSG3P32926 999 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 AVPR1AP37288 418 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 NDUFA9Q16795 377 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 FAM91A1Q658Y4 838 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 HPS6Q86YV9 775 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 OR4C6Q8NH72 309 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 SEC14L1Q92503 715 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 HPDLQ96IR7 371 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 SAGE1Q9NXZ1 904 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 MRPS7Q9Y2R9 242 aaKnown RBP12.6□□□□□ -0.39
COL6A3-203ENST00000353578 CYP7B1O75881 506 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 AP2A2O94973 939 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 TTPAP49638 278 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 LSAMPQ13449 338 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 STARD3Q14849 445 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 STXBP5Q5T5C0 1151 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ARMC6Q6NXE6 501 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 LPAR1Q92633 364 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 TBX22Q9Y458 520 aa12.6□□□□□ -0.39
COL6A3-203ENST00000353578 ULK1O75385 1050 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 FABP3P05413 133 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SREBF2Q12772 1141 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 TIGD6Q17RP2 521 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 BTF3L4Q96K17 158 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 HOXC10Q9NYD6 342 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SLC19A2O60779 497 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 CYP2F1P24903 491 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 CCNFP41002 786 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 OSTNP61366 133 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 DPY19L3Q6ZPD9 716 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 INPP4AQ96PE3 977 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SH2D3AQ9BRG2 576 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 NFKBIZQ9BYH8 718 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms