RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 PHOSPHO2Q8TCD6 241 aa16.33■□□□□ 0.2
LITAF-201ENST00000339430 C2orf15Q8WU43 125 aaKnown RBP16.33■□□□□ 0.2
LITAF-201ENST00000339430 CLP1Q92989 425 aaKnown RBP16.33■□□□□ 0.2
LITAF-201ENST00000339430 TSC22D3Q99576 134 aa16.33■□□□□ 0.2
LITAF-201ENST00000339430 TRPC7Q9HCX4 862 aa16.33■□□□□ 0.2
LITAF-201ENST00000339430 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.33■□□□□ 0.2
LITAF-201ENST00000339430 ADA2Q9NZK5 511 aa16.33■□□□□ 0.2
LITAF-201ENST00000339430 CCDC167Q9P0B6 97 aa16.33■□□□□ 0.2
LITAF-201ENST00000339430 FNIP2Q9P278 1114 aa16.33■□□□□ 0.2
LITAF-201ENST00000339430 CEP290O15078 2479 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 UBFD1O14562 309 aaKnown RBP16.32■□□□□ 0.2
LITAF-201ENST00000339430 SLC7A4O43246 635 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 SUPT7LO94864 414 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 RBP1P09455 135 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 VCLP18206 1134 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 ME2P23368 584 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 ACAP2Q15057 778 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 MMEL1Q495T6 779 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 COL13A1Q5TAT6 717 aaPredicted RBP16.32■□□□□ 0.2
LITAF-201ENST00000339430 ARHGAP18Q8N392 663 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 HMGCLL1Q8TB92 370 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 DNAJC1Q96KC8 554 aaKnown RBP16.32■□□□□ 0.2
LITAF-201ENST00000339430 MTIF3Q9H2K0 278 aaKnown RBP16.32■□□□□ 0.2
LITAF-201ENST00000339430 MFSD1Q9H3U5 465 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 COPS7BQ9H9Q2 264 aaPredicted RBP16.32■□□□□ 0.2
LITAF-201ENST00000339430 EML4Q9HC35 981 aaKnown RBP16.32■□□□□ 0.2
LITAF-201ENST00000339430 DTNAQ9Y4J8 743 aa16.32■□□□□ 0.2
LITAF-201ENST00000339430 IGLV3-10A0A075B6K4 115 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 CCDC85CA6NKD9 419 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 CASQ2O14958 399 aaPredicted RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 PAPSS2O95340 614 aaPredicted RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 TRIP4Q15650 581 aaPredicted RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 FBXL19Q6PCT2 694 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 TEX26Q8N6G2 289 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 ICA1LQ8NDH6 482 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 OR13C4Q8NGS5 318 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 ZNF461Q8TAF7 563 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 GABPB2Q8TAK5 448 aaPredicted RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 SP7Q8TDD2 431 aaPredicted RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 CCDC126Q96EE4 140 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 GSTO2Q9H4Y5 243 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 CCSER2Q9H7U1 834 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 MRPL17Q9NRX2 175 aaKnown RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 PDP2Q9P2J9 529 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 RANBP2P49792 3224 aaKnown RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 CCDC189A1A4V9 331 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 GOT2P00505 430 aaKnown RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 PRSS56P0CW18 603 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 CA8P35219 290 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 CDH13P55290 713 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 PTK2BQ14289 1009 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 AGKQ53H12 422 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 C9orf50Q5SZB4 431 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 OGFRL1Q5TC84 451 aaPredicted RBP16.31■□□□□ 0.2
LITAF-201ENST00000339430 ISLR2Q6UXK2 745 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 ISCA2Q86U28 154 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 PTERQ96BW5 349 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 GBP5Q96PP8 586 aa16.31■□□□□ 0.2
LITAF-201ENST00000339430 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.31■□□□□ 0.24e-7■■■■□ 21.3
LITAF-201ENST00000339430 UBDO15205 165 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 IL10RBQ08334 325 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 PDAP1Q13442 181 aaKnown RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 SERINC3Q13530 473 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 FASTKQ14296 549 aaKnown RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 SEMA3AQ14563 771 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 ZNF235Q14590 738 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 SLC14A2Q15849 920 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 NAIF1Q69YI7 327 aaPredicted RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 ZNF549Q6P9A3 640 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 SPATA24Q86W54 205 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 APLFQ8IW19 511 aaPredicted RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 AFAP1L2Q8N4X5 818 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 GIPC2Q8TF65 315 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 STON2Q8WXE9 905 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 DCUN1D1Q96GG9 259 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 LRGUKQ96M69 825 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 KLHL32Q96NJ5 620 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 MRPL1Q9BYD6 325 aaKnown RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 MEAF6Q9HAF1 191 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 TRAF6Q9Y4K3 522 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 LOC285095A0A1B0GVY8 99 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 EME2A4GXA9 379 aaPredicted RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 GPC4O75487 556 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 ABLIM3O94929 683 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 SEC24AO95486 1093 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 ATF6P18850 670 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 KCNQ1P51787 676 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 SATB1Q01826 763 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 FOLH1Q04609 750 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 NADSYN1Q6IA69 706 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 LAYNQ6UX15 382 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 OR9I1Q8NGQ6 314 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 POLR1EQ9GZS1 481 aaKnown RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 FBRSL1Q9HCM7 1045 aaKnown RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 TLR8Q9NR97 1041 aaKnown RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 C6orf203Q9P0P8 240 aaPredicted RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 AFF4Q9UHB7 1163 aaKnown RBP16.3■□□□□ 0.2
LITAF-201ENST00000339430 VPS28Q9UK41 221 aa16.3■□□□□ 0.2
LITAF-201ENST00000339430 A0A0D9SEW6 157 aa16.29■□□□□ 0.2
LITAF-201ENST00000339430 CCDC162PA2VCL2 907 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms