RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ARL2P36404 184 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 MATKP42679 507 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PTGIRP43119 386 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PSEN1P49768 467 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 JAM2P57087 298 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 ACSM2AQ08AH3 577 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 CA9Q16790 459 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PTPN20Q4JDL3 420 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 AKIRIN2Q53H80 203 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 RALGPS1Q5JS13 557 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 ACSM2BQ68CK6 577 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 CCDC36Q8IYA8 594 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 JOSD2Q8TAC2 188 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 EEF1AKMT1Q8WVE0 214 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 LRTOMTQ8WZ04 291 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 TSPAN18Q96SJ8 248 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 POLR1EQ9GZS1 481 aaKnown RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 PTGFRNQ9P2B2 879 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 BAIAP2Q9UQB8 552 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PEX16Q9Y5Y5 336 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PTCH2Q9Y6C5 1203 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 ASLP04424 464 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 FYNP06241 537 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PTGS2P35354 604 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 SCN1BQ07699 218 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 TNFAIP8L3Q5GJ75 292 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 LENG9Q96B70 501 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 ZNF317Q96PQ6 595 aaPredicted RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 NODALQ96S42 347 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 RBM4BQ9BQ04 359 aaKnown RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 RBM4Q9BWF3 364 aaKnown RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 GRHL1Q9NZI5 618 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 KLQ9UEF7 1012 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 SLC7A8Q9UHI5 535 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 MAFBQ9Y5Q3 323 aaPredicted RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 MRPL42Q9Y6G3 142 aaKnown RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 CCDC189A1A4V9 331 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 GPIP06744 558 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 UMPSP11172 480 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 CYP4B1P13584 511 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 FMO4P31512 558 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 BCAP31P51572 246 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 TUBA3EQ6PEY2 450 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 VSTM1Q6UX27 236 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 C12orf65Q9H3J6 166 aaKnown RBP11.51□□□□□ -0.57
VPS39-201ENST00000318006 PIGUQ9H490 435 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 BTRCQ9Y297 605 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 TRAF6Q9Y4K3 522 aa11.51□□□□□ -0.57
VPS39-201ENST00000318006 PHLPP1O60346 1717 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 KCPQ6ZWJ8 1503 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 A0A1W2PQ72 361 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 TCRBV7S2A1N4TA0A589 114 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 PDLIM1O00151 329 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 USP2O75604 605 aaPredicted RBP11.5□□□□□ -0.57
VPS39-201ENST00000318006 OR6B1O95007 311 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ERBB2P04626 1255 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 NR2F6P10588 404 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 GOT1P17174 413 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 MAPKAPK2P49137 400 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ACADVLP49748 655 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 LLGL2Q6P1M3 1020 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 KRT77Q7Z794 578 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 TOP6BLQ8N6T0 577 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 NXF3Q9H4D5 531 aaKnown RBP11.5□□□□□ -0.57
VPS39-201ENST00000318006 TMEM138Q9NPI0 162 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 TBCCD1Q9NVR7 557 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 RPS6KB2Q9UBS0 482 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ZNF112Q9UJU3 913 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 EFR3BQ9Y2G0 817 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 SMIM35A0A1B0GVV1 85 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 FAM92AA1XBS5 289 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 MSCO60682 206 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 SLC22A3O75751 556 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ANGPTL1O95841 491 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ATF4P18848 351 aaPredicted RBP11.5□□□□□ -0.57
VPS39-201ENST00000318006 MRPS5P82675 430 aaKnown RBP11.5□□□□□ -0.57
VPS39-201ENST00000318006 PSMD5Q16401 504 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 CUZD1Q86UP6 607 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ZNF614Q8N883 585 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 OR2T12Q8NG77 320 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 LPPQ93052 612 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 COQ10BQ9H8M1 238 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 DMAC2Q9NW81 257 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 UXTQ9UBK9 157 aaPredicted RBP11.5□□□□□ -0.57
VPS39-201ENST00000318006 SNX7Q9UNH6 387 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 GIT1Q9Y2X7 761 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ZNF541Q9H0D2 1346 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 BCKDKO14874 412 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ADAMTS3O15072 1205 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 CST3P01034 146 aaPredicted RBP11.5□□□□□ -0.57
VPS39-201ENST00000318006 ITGB6P18564 788 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 NR4A1P22736 598 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 GRK4P32298 578 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 ATP5C1P36542 298 aaKnown RBP11.5□□□□□ -0.57
VPS39-201ENST00000318006 TIGD2Q4W5G0 525 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 GLT6D1Q7Z4J2 308 aa11.5□□□□□ -0.57
VPS39-201ENST00000318006 MRPL45Q9BRJ2 306 aaKnown RBP11.5□□□□□ -0.57
VPS39-201ENST00000318006 PRLP01236 227 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 TSPAN8P19075 237 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 GMFBP60983 142 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms