RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 C16orf59Q7L2K0 433 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 DHDDSQ86SQ9 333 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 PHTF2Q8N3S3 785 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 GDPD5Q8WTR4 605 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 PPP2R3CQ969Q6 453 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 SORT1Q99523 831 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 NDFIP2Q9NV92 336 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 PLA2G4CQ9UP65 541 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 LRRC42Q9Y546 428 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 WASF2Q9Y6W5 498 aa16.3■□□□□ 0.2
CTCF-201ENST00000264010 MTMR11A4FU01 709 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 BOLA2-SMG1P6H3BVE0 249 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 INHAP05111 366 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 PKNOX1P55347 436 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 ITGADQ13349 1161 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 DEFB115Q30KQ5 88 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 GPR158Q5T848 1215 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 ZNF598Q86UK7 904 aaKnown RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 HPS6Q86YV9 775 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 OR7D4Q8NG98 312 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 ACTRT2Q8TDY3 377 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 PBXIP1Q96AQ6 731 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 CCSER2Q9H7U1 834 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 MID1IP1Q9NPA3 183 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 COMMD3-BMI1R4GMX3 469 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 HAPLN1P10915 354 aaPredicted RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 CES1P23141 567 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 RALGDSQ12967 914 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 PLD1Q13393 1074 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 SQLEQ14534 574 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 RBM20Q5T481 1227 aaKnown RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 ANKS6Q68DC2 871 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 PTRHD1Q6GMV3 140 aaKnown RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 ZFP1Q6P2D0 407 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 CLVS1Q8IUQ0 354 aaPredicted RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 BRSK1Q8TDC3 778 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 EXOC2Q96KP1 924 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 ING2Q9H160 280 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 TRNAU1APQ9NX07 287 aaKnown RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 WASH4PA8MWX3 477 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 I6L893 689 aaPredicted RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 SLC22A2O15244 555 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 ACVRL1P37023 503 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 SLC11A1P49279 550 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 CDH4P55283 916 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 PEX6Q13608 980 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 B3GNT6Q6ZMB0 384 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 REM2Q8IYK8 340 aaPredicted RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 STAG3L4Q8TBR4 150 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 ZNF599Q96NL3 588 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 CCDC167Q9P0B6 97 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 ZDHHC2Q9UIJ5 367 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 TSR3Q9UJK0 312 aaKnown RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 AGO1Q9UL18 857 aaKnown RBP16.29■□□□□ 0.2
CTCF-201ENST00000264010 FAM50BQ9Y247 325 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 TRAF6Q9Y4K3 522 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 TRIM17Q9Y577 477 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 SCN4AP35499 1836 aa16.29■□□□□ 0.2
CTCF-201ENST00000264010 TTC24A2A3L6 582 aaPredicted RBP16.28■□□□□ 0.2
CTCF-201ENST00000264010 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.28■□□□□ 0.2
CTCF-201ENST00000264010 URODP06132 367 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 MAGEA8P43361 318 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 EPHB3P54753 998 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 PFKFB4Q16877 469 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 PRSS55Q6UWB4 352 aaPredicted RBP16.28■□□□□ 0.2
CTCF-201ENST00000264010 SLC25A23Q9BV35 468 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 ANK1P16157 1881 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 A0A1W2PQ45 241 aaPredicted RBP16.28■□□□□ 0.2
CTCF-201ENST00000264010 A0A1W2PQY0 241 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 NEMP2A6NFY4 417 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 TNFRSF10BO14763 440 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 CNPY1Q3B7I2 92 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 NAPRTQ6XQN6 538 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 DSELQ8IZU8 1212 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 BHMTQ93088 406 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 ISL2Q96A47 359 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 HSPBAP1Q96EW2 488 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 PANX3Q96QZ0 392 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 GPR62Q9BZJ7 368 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 SPATA7Q9P0W8 599 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 TRIM64CA6NLI5 447 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 LIN7AO14910 233 aaPredicted RBP16.28■□□□□ 0.2
CTCF-201ENST00000264010 GOT2P00505 430 aaKnown RBP16.28■□□□□ 0.2
CTCF-201ENST00000264010 HOXC13P31276 330 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 SERINC3Q13530 473 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 ZNF786Q8N393 782 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 FBXO22Q8NEZ5 403 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 SKA2Q8WVK7 121 aaPredicted RBP16.28■□□□□ 0.2
CTCF-201ENST00000264010 IGSF8Q969P0 613 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 TRIM39Q9HCM9 518 aa16.28■□□□□ 0.2
CTCF-201ENST00000264010 LYNP07948 512 aa16.27■□□□□ 0.2
CTCF-201ENST00000264010 GNAZP19086 355 aa16.27■□□□□ 0.2
CTCF-201ENST00000264010 FUT4P22083 530 aa16.27■□□□□ 0.2
CTCF-201ENST00000264010 CCL23P55773 120 aa16.27■□□□□ 0.2
CTCF-201ENST00000264010 RING1Q06587 406 aa16.27■□□□□ 0.2
CTCF-201ENST00000264010 FRMD7Q6ZUT3 714 aa16.27■□□□□ 0.2
CTCF-201ENST00000264010 RANBP9Q96S59 729 aa16.27■□□□□ 0.2
CTCF-201ENST00000264010 EGFL8Q99944 293 aa16.27■□□□□ 0.2
CTCF-201ENST00000264010 ZFP37Q9Y6Q3 630 aaPredicted RBP16.27■□□□□ 0.2
CTCF-201ENST00000264010 ENPP3O14638 875 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms