RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 OSBPL1AQ9BXW6 950 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 ACTR8Q9H981 624 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 STARD13Q9Y3M8 1113 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 TNPO3Q9Y5L0 923 aaKnown RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 SOCS5O75159 536 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 VIPR2P41587 438 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 PTGER3P43115 390 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 MAGEA6P43360 314 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 NIPAL4Q0D2K0 466 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 MPP7Q5T2T1 576 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 TEDDM1Q5T9Z0 273 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 OTUD1Q5VV17 481 aaPredicted RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 SPATA6LQ8N4H0 392 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 BANPQ8N9N5 519 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 OR56A4Q8NGH8 313 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 AP2M1Q96CW1 435 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 MRM3Q9HC36 420 aaKnown RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 SLCO1B3Q9NPD5 702 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 INTS10Q9NVR2 710 aaKnown RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 SLC2A6Q9UGQ3 507 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 PDZK1P1A8MUH7 402 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 PRKCGP05129 697 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 DRD4P21917 467 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 CD68P34810 354 aaPredicted RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 DHCR24Q15392 516 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 DBN1Q16643 649 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 ARMC3Q5W041 872 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 CYP4V2Q6ZWL3 525 aaPredicted RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 GAREM2Q75VX8 874 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 LYSMD3Q7Z3D4 306 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 LINGO1Q96FE5 620 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 NSL1Q96IY1 281 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 TXLNGYQ9BZA5 131 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 SLC17A6Q9P2U8 582 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 TMCO1Q9UM00 188 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 LCHNA4D1U4 455 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 CCNT2O60583 730 aaKnown RBP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 PLIN3O60664 434 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ESR1P03372 595 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ALPIP09923 528 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 MYOGP15173 224 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 GLDCP23378 1020 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ARSIQ5FYB1 569 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 LIPMQ5VYY2 423 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 MECRQ9BV79 373 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 MID1IP1Q9NPA3 183 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 MRPL40Q9NQ50 206 aaKnown RBP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ELOVL2Q9NXB9 296 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ARL15Q9NXU5 204 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 CEP290O15078 2479 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 OR51F1A6NGY5 319 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ANGPT2O15123 496 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ESRRBO95718 433 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 PHEXP78562 749 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 GRM2Q14416 872 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 HIST2H2ACQ16777 129 aaPredicted RBP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ITPRIPL2Q3MIP1 535 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 SH2D4BQ5SQS7 431 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 HIST2H2AA3Q6FI13 130 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 CNSTQ6PJW8 725 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 SERPINA9Q86WD7 417 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 AGGF1Q8N302 714 aaeCLIP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF276Q8N554 614 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF366Q8N895 744 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 NXNL1Q96CM4 212 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 SLC22A12Q96S37 553 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 GPR21Q99679 349 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 VCXQ9H320 206 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 TCF7L2Q9NQB0 619 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ERVW-1Q9UQF0 538 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 INPP4BO15327 924 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 EDF1O60869 148 aaKnown RBP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 IGLV3-25P01717 112 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ANXA5P08758 320 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ZDHHC11BP0C7U3 371 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 HOXA9P31269 272 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 PIK3CGP48736 1102 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 CCNG1P51959 295 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 GPR33Q49SQ1 333 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 DNAL1Q4LDG9 190 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 NADSYN1Q6IA69 706 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 TPRG1Q6ZUI0 275 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 MTDHQ86UE4 582 aaKnown RBP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 C10orf107Q8IVU9 208 aa11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ST13P5Q8NFI4 369 aaPredicted RBP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF689Q96CS4 500 aaPredicted RBP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 DNMT3BQ9UBC3 853 aaKnown RBP11.57□□□□□ -0.56
VPS4A-201ENST00000254950 LOC100653049A0A140TA62 436 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 FAM92AA1XBS5 289 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 B2RBV5 119 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 RNASEH2AO75792 299 aaKnown RBP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 KRT34O76011 436 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 CEBPBP17676 345 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 HOXC13P31276 330 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 STK19P49842 368 aaPredicted RBP11.56□□□□□ -0.56
VPS4A-201ENST00000254950 SNCBQ16143 134 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 CYS1Q717R9 158 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 TMEM135Q86UB9 458 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 TRIM48Q8IWZ4 208 aa11.56□□□□□ -0.56
VPS4A-201ENST00000254950 APCDD1Q8J025 514 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms