RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ESAMQ96AP7 390 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 C19orf60Q96EN9 201 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 NRBF2Q96F24 287 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 GOLGA2P5Q9HBQ8 144 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 MID1IP1Q9NPA3 183 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 ARMC1Q9NVT9 282 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 PIP5K1BO14986 540 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 PFDN6O15212 129 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 BEST1O76090 585 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 IPO13O94829 963 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 ATP5F1P24539 256 aaPredicted RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 RPS12P25398 132 aaKnown RBP14.37□□□□□ -0.11
SDC1-201ENST00000254351 RBP5P82980 135 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 LIPEQ05469 1076 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 LAPTM4AQ15012 233 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 BTBD8Q5XKL5 378 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 ZNF354CQ86Y25 554 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 MFSD2AQ8NA29 543 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 TRPV3Q8NET8 790 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 SLC30A3Q99726 388 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 FICDQ9BVA6 458 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 GBA3Q9H227 469 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 ALG2Q9H553 416 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 CACNG4Q9UBN1 327 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 PCDHGA3Q9Y5H0 932 aa14.37□□□□□ -0.11
SDC1-201ENST00000254351 A0A1B0GTL3 188 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 DPYSL4O14531 572 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 JRKO75564 520 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 ARIH2O95376 493 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 DLGAP3O95886 979 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 GFAPP14136 432 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 ADSLP30566 484 aaPredicted RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 GSK3BP49841 420 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 HLCSP50747 726 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 SELENBP1Q13228 472 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 MXD4Q14582 209 aaPredicted RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 FAM160B1Q5W0V3 765 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 CYHR1Q6ZMK1 362 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 MAELQ96JY0 434 aaKnown RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 UHRF1Q96T88 793 aaPredicted RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 DOK1Q99704 481 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 SPC25Q9HBM1 224 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 A0A1W2PQ67 120 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 OR51F1A6NGY5 319 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 I6L893 689 aaPredicted RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 ZNF701M0R085 212 aaPredicted RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 SLC22A2O15244 555 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 ARF4P18085 180 aaPredicted RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 PROZP22891 400 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 MBTD1Q05BQ5 628 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 GRM1Q13255 1194 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 INTS11Q5TA45 600 aaKnown RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 VASH1Q7L8A9 365 aaPredicted RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 ADCK1Q86TW2 530 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 ANKRD13AQ8IZ07 590 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 MTMR14Q8NCE2 650 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 OR6P1Q8NGX9 317 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 LRRC58Q96CX6 371 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 ADAMTS10Q9H324 1103 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 ATP13A3Q9H7F0 1226 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 INTS7Q9NVH2 962 aaKnown RBP14.36□□□□□ -0.11
SDC1-201ENST00000254351 UTS2RQ9UKP6 389 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 PCDHB3Q9Y5E6 796 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 PCDHGA8Q9Y5G5 932 aa14.36□□□□□ -0.11
SDC1-201ENST00000254351 HACD1B0YJ81 288 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CYP4B1P13584 511 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 GLUD2P49448 558 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CCNA1P78396 465 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 AAK1Q2M2I8 961 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 NBPF12Q5TAG4 269 aaPredicted RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 DEPDC1Q5TB30 811 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 ZNF773Q6PK81 442 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 AFAP1L2Q8N4X5 818 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 FBXO30Q8TB52 745 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 SEPT1Q8WYJ6 367 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 KCNN1Q92952 543 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 ISL2Q96A47 359 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 MYRFLQ96LU7 910 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CEP44Q9C0F1 390 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 DNAI2Q9GZS0 605 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CASS4Q9NQ75 786 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 EIF2B3Q9NR50 452 aaKnown RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 SEPT3Q9UH03 358 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 ANAPC2Q9UJX6 822 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 ZNF638Q14966 1978 aaKnown RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 LAMA3Q16787 3333 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 SHROOM3Q8TF72 1996 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CRCPO75575 148 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 LRIG2O94898 1065 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CPB1P15086 417 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CYP2B6P20813 491 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 TTKP33981 857 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 RFC2P35250 354 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 MAP2K4P45985 399 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 RPS3AP61247 264 aaKnown RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 SH3BP2P78314 561 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 PFKFB4Q16877 469 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 UBE2UQ5VVX9 321 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 SPARTQ8N0X7 666 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 RAB2BQ8WUD1 216 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms