RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 MECRQ9BV79 373 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 RSL24D1Q9UHA3 163 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CNTNAP1P78357 1384 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 A0A1W2PQ67 120 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 RPP40O75818 363 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 WFS1O76024 890 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 KLHL18O94889 574 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 GJB1P08034 283 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 BRCC3P46736 316 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CERCAMQ5T4B2 595 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 RNASEH2BQ5TBB1 312 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 SDHAF4Q5VUM1 108 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 LIN54Q6MZP7 749 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CXXC5Q7LFL8 322 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 ZNF248Q8NDW4 579 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 TEX47Q8TBZ9 253 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 KLHL5Q96PQ7 755 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 ST6GALNAC4Q9H4F1 302 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 C3orf14Q9HBI5 128 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 PLGRKTQ9HBL7 147 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 SLC17A7Q9P2U7 560 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 MRPS7Q9Y2R9 242 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 ZNF780BQ9Y6R6 833 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 ATRNO75882 1429 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 SMIM28A0A1B0GU29 152 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 IPO13O94829 963 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 DBTP11182 482 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CAPN13Q6MZZ7 669 aaPredicted RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 PQLC1Q8N2U9 271 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 AGO3Q9H9G7 860 aaKnown RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 TOR4AQ9NXH8 423 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 ITGB1BP2Q9UKP3 347 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 PSMD13Q9UNM6 376 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 H0Y858 1186 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 LRIG2O94898 1065 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 OR1D2P34982 312 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 GNPDA1P46926 289 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CCL23P55773 120 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 OLR1P78380 273 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 FOLH1Q04609 750 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 UBE2R2Q712K3 238 aaPredicted RBP13.56□□□□□ -0.24
SF3A1-201ENST00000215793 COQ7Q99807 217 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 TTLL2Q9BWV7 592 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 KCTD5Q9NXV2 234 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 GALNT8Q9NY28 637 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 CLIC5Q9NZA1 410 aa13.56□□□□□ -0.24
SF3A1-201ENST00000215793 DISP2A7MBM2 1401 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 A0A0J9YYE9 177 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 CACNB4O00305 520 aaPredicted RBP13.55□□□□□ -0.24
SF3A1-201ENST00000215793 TMCC2O75069 709 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 NDUFS2O75306 463 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 PTP4A2Q12974 167 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 XYLT1Q86Y38 959 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 DSELQ8IZU8 1212 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 SLC4A11Q8NBS3 891 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 ADCY4Q8NFM4 1077 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 ZNF483Q8TF39 744 aaPredicted RBP13.55□□□□□ -0.24
SF3A1-201ENST00000215793 BTBD9Q96Q07 612 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 CCDC28BQ9BUN5 200 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 MSRAQ9UJ68 235 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 DDX3YO15523 660 aaKnown RBP13.55□□□□□ -0.24
SF3A1-201ENST00000215793 SLC25A12O75746 678 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 SNHG28P0DPA3 235 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 PCSK2P16519 638 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 MYL9P24844 172 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 KLF10Q13118 480 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 POM121L1PQ3SYA9 428 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 C17orf64Q86WR6 236 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 SLC4A9Q96Q91 983 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 GPR20Q99678 358 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 EXD2Q9NVH0 621 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 FGF19O95750 216 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 NDST3O95803 873 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 ADH1CP00326 375 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 DPYSQ14117 519 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 NOL9Q5SY16 702 aaKnown RBP13.55□□□□□ -0.24
SF3A1-201ENST00000215793 SLC25A24Q6NUK1 477 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 SLC26A9Q7LBE3 791 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 CPSF7Q8N684 471 aaKnown RBP13.55□□□□□ -0.24
SF3A1-201ENST00000215793 IRGQQ8WZA9 623 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 CAB39LQ9H9S4 337 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 MBD2Q9UBB5 411 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 EGFL7Q9UHF1 273 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 SSR3Q9UNL2 185 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 POLR3HQ9Y535 204 aaPredicted RBP13.55□□□□□ -0.24
SF3A1-201ENST00000215793 IRGMA1A4Y4 181 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 LRCH4O75427 683 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 FGBP02675 491 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 PRKAR2AP13861 404 aaKnown RBP13.55□□□□□ -0.24
SF3A1-201ENST00000215793 RHOQP17081 205 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 CAPGP40121 348 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 SLC26A3P40879 764 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 BUD31P41223 144 aaPredicted RBP13.55□□□□□ -0.24
SF3A1-201ENST00000215793 TOMM20Q15388 145 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 CPTPQ5TA50 214 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 DDI2Q5TDH0 399 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 PLD5Q8N7P1 536 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 POC5Q8NA72 575 aa13.55□□□□□ -0.24
SF3A1-201ENST00000215793 LRRN4Q8WUT4 740 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms