RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 IGFBP7Q16270 282 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 PNCKQ6P2M8 343 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 DPPA4Q7L190 304 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 HEATR4Q86WZ0 1026 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 CACNA2D3Q8IZS8 1091 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 C3orf20Q8ND61 904 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 SLC12A9Q9BXP2 914 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 SLC39A8Q9C0K1 460 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 ZNF71Q9NQZ8 489 aaPredicted RBP15.03■□□□□ -0
SYNE2-228ENST00000639659 PHPT1Q9NRX4 125 aaPredicted RBP15.03■□□□□ -0
SYNE2-228ENST00000639659 SLC39A1Q9NY26 324 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 B4GALT6Q9UBX8 382 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 B3GALT1Q9Y5Z6 326 aa15.03■□□□□ -0
SYNE2-228ENST00000639659 TTC24A2A3L6 582 aaPredicted RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 WASH4PA8MWX3 477 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 PDE2AO00408 941 aaPredicted RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 EEF2KO00418 725 aaKnown RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 HGSO14964 777 aaPredicted RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 FGF1P05230 155 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 MYCLP1P12525 358 aaPredicted RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 UNGP13051 313 aaPredicted RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 UGT1A3P35503 534 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 STAT1P42224 750 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 CCR10P46092 362 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 ZNF143P52747 638 aaPredicted RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 RPL7AP62424 266 aaKnown RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 CLEC16AQ2KHT3 1053 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 TCP11X2Q5H9J9 407 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 SNAP47Q5SQN1 464 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 DCUN1D2Q6PH85 259 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 ZNF761Q86XN6 746 aaPredicted RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 ADNPQ9H2P0 1102 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 DHX35Q9H5Z1 703 aaKnown RBP15.02■□□□□ -0
SYNE2-228ENST00000639659 LRRC19Q9H756 370 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 TMEM9Q9P0T7 183 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 DACH1Q9UI36 760 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 SUFUQ9UMX1 484 aa15.02■□□□□ -0
SYNE2-228ENST00000639659 SIGLEC16A6NMB1 481 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 EFCAB7A8K855 629 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 EPHB6O15197 1021 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 RAD1O60671 282 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 TPM2P07951 284 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 GM2AP17900 193 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 CD1CP29017 333 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 ACTR1BP42025 376 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 POLD2P49005 469 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 ARSDP51689 593 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 NDST2P52849 883 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 ACTR1AP61163 376 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 UBE2HP62256 183 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 POLR2LP62875 67 aaKnown RBP15.01□□□□□ -0.01
SYNE2-228ENST00000639659 UBAP2LQ14157 1087 aaKnown RBP15.01□□□□□ -0.01
SYNE2-228ENST00000639659 RAET1GQ6H3X3 334 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 ARHGAP36Q6ZRI8 547 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 NRROSQ86YC3 692 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 AGBL5Q8NDL9 886 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 GPBAR1Q8TDU6 330 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 PTCD2Q8WV60 388 aaKnown RBP15.01□□□□□ -0.01
SYNE2-228ENST00000639659 OCIAD1Q9NX40 245 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 KCNK4Q9NYG8 393 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 AP4E1Q9UPM8 1137 aa15.01□□□□□ -0.01
SYNE2-228ENST00000639659 TRBV23OR9-2A0A075B6M9 112 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 CFAP69A5D8W1 941 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 ZNF891A8MT65 544 aaPredicted RBP15□□□□□ -0.01
SYNE2-228ENST00000639659 A8MU76 341 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15□□□□□ -0.01
SYNE2-228ENST00000639659 CPP00450 1065 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 HOXC4P09017 264 aaPredicted RBP15□□□□□ -0.01
SYNE2-228ENST00000639659 CSF2RBP32927 897 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 TRIM23P36406 574 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 ETV3P41162 512 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 LIMK2P53671 638 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 CTBSQ01459 385 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 CNGA3Q16281 694 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 CA9Q16790 459 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 FKBP15Q5T1M5 1219 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 AFMIDQ63HM1 303 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 ANKS6Q68DC2 871 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 ZNF438Q7Z4V0 828 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 C9orf43Q8TAL5 461 aaPredicted RBP15□□□□□ -0.01
SYNE2-228ENST00000639659 ECHDC3Q96DC8 303 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 RNF31Q96EP0 1072 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 AHCYL2Q96HN2 611 aaKnown RBP15□□□□□ -0.01
SYNE2-228ENST00000639659 CTRCQ99895 268 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 CNPY3Q9BT09 278 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 DONSONQ9NYP3 566 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 PCSK1NQ9UHG2 260 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 PLEKHM1Q9Y4G2 1056 aa15□□□□□ -0.01
SYNE2-228ENST00000639659 NKX2-8O15522 239 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 DUX1O43812 170 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 CEACAM5P06731 702 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 EEF1GP26641 437 aaKnown RBP14.99□□□□□ -0.01
SYNE2-228ENST00000639659 ERCC5P28715 1186 aaPredicted RBP14.99□□□□□ -0.01
SYNE2-228ENST00000639659 CSNK1DP48730 415 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 AIF1P55008 147 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 GSCP56915 257 aaPredicted RBP14.99□□□□□ -0.01
SYNE2-228ENST00000639659 JAM2P57087 298 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 CDK3Q00526 305 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 ZNF235Q14590 738 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 PPP6R3Q5H9R7 873 aaPredicted RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms