RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ATP5BP06576 529 aaKnown RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 PRSS56P0CW18 603 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 LAMP2P13473 410 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 HNF1BP35680 557 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 LTBRP36941 435 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 NNMTP40261 264 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 SERPINB4P48594 390 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 POLD2P49005 469 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 VASPP50552 380 aaPredicted RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 IRF9Q00978 393 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 KDSRQ06136 332 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 RBM20Q5T481 1227 aaKnown RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 N4BP2L1Q5TBK1 243 aaPredicted RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 MRNIPQ6NTE8 343 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 C16orf46Q6P387 395 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 AFTPHQ6ULP2 937 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 PARM1Q6UWI2 310 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 RGS9BPQ6ZS82 235 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 CLEC14AQ86T13 490 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 YAF2Q8IY57 180 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 PLD6Q8N2A8 252 aaKnown RBP16.88■□□□□ 0.29
CLN3-252ENST00000636907 TTC8Q8TAM2 541 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 LRRC8CQ8TDW0 803 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 NXPE3Q969Y0 559 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 ELMO2Q96JJ3 720 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 RIPOR3Q96MK2 946 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 POMKQ9H5K3 350 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 ELOVL2Q9NXB9 296 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 IL17CQ9P0M4 197 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 DEC1Q9P2X7 70 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 MTCH2Q9Y6C9 303 aa16.88■□□□□ 0.29
CLN3-252ENST00000636907 CAPN8A6NHC0 703 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 PSMC3P17980 439 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 OGNP20774 298 aaKnown RBP16.87■□□□□ 0.29
CLN3-252ENST00000636907 RECQLP46063 649 aaPredicted RBP16.87■□□□□ 0.29
CLN3-252ENST00000636907 CLCN5P51795 746 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 RUNX3Q13761 415 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 ZKSCAN8Q15776 578 aaPredicted RBP16.87■□□□□ 0.29
CLN3-252ENST00000636907 CDKN3Q16667 212 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 INSCQ1MX18 579 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 FASTKD1Q53R41 847 aaKnown RBP16.87■□□□□ 0.29
CLN3-252ENST00000636907 KYAT3Q6YP21 454 aaKnown RBP16.87■□□□□ 0.29
CLN3-252ENST00000636907 RAPH1Q70E73 1250 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 CEP97Q8IW35 865 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 CPA6Q8N4T0 437 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 ZNF75CPQ92670 426 aaPredicted RBP16.87■□□□□ 0.29
CLN3-252ENST00000636907 FGF14Q92915 247 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 ELSPBP1Q96BH3 223 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 ZNF641Q96N77 438 aaPredicted RBP16.87■□□□□ 0.29
CLN3-252ENST00000636907 NDNQ99608 321 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 OMDQ99983 421 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 TTYH1Q9H313 450 aaPredicted RBP16.87■□□□□ 0.29
CLN3-252ENST00000636907 MTG2Q9H4K7 406 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 FGFR1OP2Q9NVK5 253 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 ZNF358Q9NW07 568 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 TMEM216Q9P0N5 145 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 PHTF1Q9UMS5 762 aa16.87■□□□□ 0.29
CLN3-252ENST00000636907 MC4RP32245 332 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 HMGCLP35914 325 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 TAS2R39P59534 338 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 RAB10P61026 200 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 IRX4P78413 519 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 PEX6Q13608 980 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 ZNF460Q14592 562 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 GRIN2CQ14957 1233 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 NAIF1Q69YI7 327 aaPredicted RBP16.86■□□□□ 0.29
CLN3-252ENST00000636907 FOXR1Q6PIV2 292 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 GRIN3AQ8TCU5 1115 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 MSLNLQ96KJ4 702 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 HEPHQ9BQS7 1158 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 ZFYVE1Q9HBF4 777 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 GTSE1Q9NYZ3 720 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 TLK1Q9UKI8 766 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 SLC8A2Q9UPR5 921 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 PKP3Q9Y446 797 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 WASF2Q9Y6W5 498 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 DENND4AQ7Z401 1863 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 C5orf42Q9H799 3197 aa16.86■□□□□ 0.29
CLN3-252ENST00000636907 C1orf232A0A0U1RR37 186 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 H7C0S8 307 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 PLIN3O60664 434 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 CLDN7O95471 211 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 SLC35E2BP0CK96 405 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 STMN1P16949 149 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 MTHFRP42898 656 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 STC1P52823 247 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 POU4F1Q01851 419 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 ADGRE1Q14246 886 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 ZSCAN26Q16670 478 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 TYSND1Q2T9J0 566 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 GDPD4Q6W3E5 623 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 FAM47EQ6ZV65 393 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 SDCCAG8Q86SQ7 713 aaPredicted RBP16.85■□□□□ 0.29
CLN3-252ENST00000636907 ZNF366Q8N895 744 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 KLHL32Q96NJ5 620 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 OLFM1Q99784 485 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 RPP25Q9BUL9 199 aaKnown RBP16.85■□□□□ 0.29
CLN3-252ENST00000636907 MECRQ9BV79 373 aa16.85■□□□□ 0.29
CLN3-252ENST00000636907 NSRP1Q9H0G5 558 aaKnown RBP16.85■□□□□ 0.29
CLN3-252ENST00000636907 ANKRD6Q9Y2G4 727 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms