RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SLC7A4O43246 635 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 APODP05090 189 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 CHN1P15882 459 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 LHCGRP22888 699 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 EIF2DP41214 584 aaKnown RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 RPL26P61254 145 aaKnown RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 LRRC14Q15048 493 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 GRTP1Q5TC63 336 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 CRTC1Q6UUV9 634 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 RFLNAQ6ZTI6 216 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 C2CD4AQ8NCU7 369 aaPredicted RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 HLA-CQ95604 372 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 P2RY13Q9BPV8 354 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 MFSD1Q9H3U5 465 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 IL17CQ9P0M4 197 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 THAP10Q9P2Z0 257 aaPredicted RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 RPL26L1Q9UNX3 145 aaKnown RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 MUC22E2RYF6 1773 aaPredicted RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 CAPN8A6NHC0 703 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 CTHP32929 405 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 RPA3P35244 121 aaPredicted RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 TFF2Q03403 129 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 GRM3Q14832 879 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 PPM1JQ5JR12 505 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 CNSTQ6PJW8 725 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 CMC1Q7Z7K0 106 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 ZC3HC1Q86WB0 502 aaKnown RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 DCLK2Q8N568 766 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 SCRN2Q96FV2 425 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 SMC6Q96SB8 1091 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 FAM129BQ96TA1 746 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 PHF7Q9BWX1 381 aaPredicted RBP20.12■□□□□ 0.81
CLN3-250ENST00000636839 ZFYVE1Q9HBF4 777 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 PHTF1Q9UMS5 762 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 SPECC1L-ADORA2AF8WAN1 911 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 TPP1O14773 563 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 STX7O15400 261 aaKnown RBP20.11■□□□□ 0.81
CLN3-250ENST00000636839 TIMP2P16035 220 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 SAT1P21673 171 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 SERPINB9P50453 376 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 LIMK2P53671 638 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 LGSNQ5TDP6 509 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 CDHR3Q6ZTQ4 885 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 CILP2Q8IUL8 1156 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 OR4L1Q8NH43 312 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 VPS39Q96JC1 886 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 ACTL7BQ9Y614 415 aa20.11■□□□□ 0.81
CLN3-250ENST00000636839 CD3EAPO15446 510 aaKnown RBP20.1■□□□□ 0.81
CLN3-250ENST00000636839 TYROBPO43914 113 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 EPHX1P07099 455 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 CA5AP35218 305 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 TIE1P35590 1138 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 HMGCLP35914 325 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PEX6Q13608 980 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 LAMB3Q13751 1172 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PON2Q15165 354 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 UGP2Q16851 508 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 ARMC3Q5W041 872 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 LRRC66Q68CR7 880 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 BANPQ8N9N5 519 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 FAM167BQ9BTA0 163 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 SLC13A1Q9BZW2 595 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PRDM6Q9NQX0 595 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 HACD3Q9P035 362 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 B4GALT6Q9UBX8 382 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 RIMKLBQ9ULI2 386 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 EDDM13A0A1B0GTR0 161 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 KPNA3O00505 521 aaPredicted RBP20.1■□□□□ 0.81
CLN3-250ENST00000636839 S1PR4O95977 384 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 SPRP35270 261 aaPredicted RBP20.1■□□□□ 0.81
CLN3-250ENST00000636839 PDE1BQ01064 536 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PTSQ03393 145 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PIANPQ8IYJ0 282 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 UCMAQ8WVF2 138 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PEX13Q92968 403 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PKNOX2Q96KN3 472 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PRSS16Q9NQE7 514 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PCMTD2Q9NV79 361 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PPM1HQ9ULR3 514 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PPIL1Q9Y3C6 166 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 PIAS3Q9Y6X2 628 aa20.1■□□□□ 0.81
CLN3-250ENST00000636839 C16orf96A6NNT2 1141 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 EGFP01133 1207 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 PSMA3P25788 255 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 MC4RP32245 332 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 SMAD2Q15796 467 aaKnown RBP20.09■□□□□ 0.81
CLN3-250ENST00000636839 C2orf27AQ580R0 203 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 ZNF805Q5CZA5 627 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 TTC7BQ86TV6 843 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 CACUL1Q86Y37 369 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 CHPFQ8IZ52 775 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 KDM1BQ8NB78 822 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 MCCC1Q96RQ3 725 aaPredicted RBP20.09■□□□□ 0.81
CLN3-250ENST00000636839 NDNQ99608 321 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 PCDH12Q9NPG4 1184 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 SLC17A7Q9P2U7 560 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 SLC39A10Q9ULF5 831 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 CRYL1Q9Y2S2 319 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 STON1Q9Y6Q2 735 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms