RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 GPR12P47775 334 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 CCT5P48643 541 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 MCM2P49736 904 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 PMS2P54278 862 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ARL4CP56559 192 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SEC61A1P61619 476 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 DSC1Q08554 894 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 FOXO1Q12778 655 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 PPFIA1Q13136 1202 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 THOC5Q13769 683 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ARHGEF6Q15052 776 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SMAD1Q15797 465 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 HLFQ16534 295 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 KIF19Q2TAC6 998 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 PLK5Q496M5 336 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 Q5PR19 223 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 DNTTIP2Q5QJE6 756 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 CBWD5Q5RIA9 395 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 LCE3EQ5T5B0 92 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 GORABQ5T7V8 394 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ATG16L1Q676U5 607 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 PMS2CLQ68D20 193 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 HEPHL1Q6MZM0 1159 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 RETSATQ6NUM9 610 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 AADACL2Q6P093 401 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 IL20RBQ6UXL0 311 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 LDHAL6AQ6ZMR3 332 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ZNF367Q7RTV3 350 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 DGLUCYQ7Z3D6 616 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SERPINA11Q86U17 422 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ANKRD18AQ8IVF6 992 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SMAP1Q8IYB5 467 aaPredicted RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ZCCHC9Q8N567 271 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 PAF1Q8N7H5 531 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 LMNTD1Q8N9Z9 388 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 OR14A16Q8NHC5 309 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SPATA20Q8TB22 786 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SLC2A12Q8TD20 617 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 GDPD5Q8WTR4 605 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 RUFY2Q8WXA3 655 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 CNOT9Q92600 299 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 KTI12Q96EK9 354 aaPredicted RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 RNFT2Q96EX2 444 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 TXNDC15Q96J42 360 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 APOLD1Q96LR9 279 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ZNF570Q96NI8 536 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 TEFMQ96QE5 360 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 FIZ1Q96SL8 496 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SIN3AQ96ST3 1273 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 DDX23Q9BUQ8 820 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 HERC2P3Q9BVR0 1158 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 NPLQ9BXD5 320 aaPredicted RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ABHD16BQ9H3Z7 469 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 CXorf56Q9H5V9 222 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 STN1Q9H668 368 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 VEZTQ9HBM0 779 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 TXNRD2Q9NNW7 524 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SPAG4Q9NPE6 437 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 G6PC2Q9NQR9 355 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 RNF146Q9NTX7 359 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 RRN3Q9NYV6 651 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 IL1RAPL1Q9NZN1 696 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 IFT80Q9P2H3 777 aaPredicted RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 NLKQ9UBE8 527 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 CNOT7Q9UIV1 285 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 ARHGAP26Q9UNA1 814 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 GDAQ9Y2T3 454 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 PCDHGB5Q9Y5G0 923 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 SRPRBQ9Y5M8 271 aaKnown RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 DOCK2Q92608 1830 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 PTPRFP10586 1907 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 MYH2Q9UKX2 1941 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 PLEKHH1Q9ULM0 1364 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 RALGAPBQ86X10 1494 aa1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 TP53BP1Q12888 1972 aaPredicted RBP1.16□□□□□ -2.22
SMARCB1-209ENST00000635578 TECPR2O15040 1411 aa1.15□□□□□ -2.22
SMARCB1-209ENST00000635578 ATRNO75882 1429 aa1.15□□□□□ -2.22
SMARCB1-209ENST00000635578 LRRC37AA6NMS7 1700 aa1.15□□□□□ -2.22
SMARCB1-209ENST00000635578 IGKV3D-15A0A087WSY6 115 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 TRBV5-7A0A0A0MS05 114 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 IGKV6D-41A0A0C4DH26 115 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 hDV102S1A0JD36 115 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 ARHGAP10A1A4S6 786 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 LINC01553A4QN01 128 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 VWA3AA6NCI4 1184 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 GAGE12JA6NER3 117 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 RRN3P2A6NIE6 340 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 I6L893 689 aaPredicted RBP1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 SNAP23O00161 211 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 CHL1O00533 1208 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 TSPAN4O14817 238 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 PER2O15055 1255 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 RNMTO43148 476 aaKnown RBP1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 DHX16O60231 1041 aaKnown RBP1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 TSPAN3O60637 253 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 GUCY1B2O75343 617 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 RGS11O94810 467 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 DDAH2O95865 285 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 ADAP00813 363 aa1.15□□□□□ -2.23
SMARCB1-209ENST00000635578 TK1P04183 234 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms