RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ORAI3Q9BRQ5 295 aa19.73■□□□□ 0.75
UPF3A-211ENST00000618700 LRRC1Q9BTT6 524 aa19.73■□□□□ 0.75
UPF3A-211ENST00000618700 EBF2Q9HAK2 575 aa19.73■□□□□ 0.75
UPF3A-211ENST00000618700 FAM86C1Q9NVL1 165 aa19.73■□□□□ 0.75
UPF3A-211ENST00000618700 TNRC6BQ9UPQ9 1833 aaKnown RBP19.73■□□□□ 0.75
UPF3A-211ENST00000618700 TRPM6Q9BX84 2022 aa19.73■□□□□ 0.75
UPF3A-211ENST00000618700 THADAQ6YHU6 1953 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 TP73O15350 636 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 RHOBTB1O94844 696 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 CLDN7O95471 211 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 C1SP09871 688 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 MAT2AP31153 395 aaKnown RBP19.72■□□□□ 0.75
UPF3A-211ENST00000618700 NUDT1P36639 197 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 EMP3P54852 163 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 PTSQ03393 145 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 HSD11B1LQ7Z5J1 315 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 TMC3Q7Z5M5 1100 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 PCGF5Q86SE9 256 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 LRRN4CLQ8ND94 238 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 BLOC1S5Q8TDH9 187 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 DNASE2BQ8WZ79 361 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 ATOH1Q92858 354 aaPredicted RBP19.72■□□□□ 0.75
UPF3A-211ENST00000618700 SNF8Q96H20 258 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 SLC17A9Q9BYT1 436 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 TRIM31Q9BZY9 425 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 RAB17Q9H0T7 212 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 ZFYVE1Q9HBF4 777 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 PIH1D1Q9NWS0 290 aaKnown RBP19.72■□□□□ 0.75
UPF3A-211ENST00000618700 SHOC2Q9UQ13 582 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 COQ6Q9Y2Z9 468 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 CEP192Q8TEP8 1941 aa19.72■□□□□ 0.75
UPF3A-211ENST00000618700 DMDP11532 3685 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 MYLKQ15746 1914 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 MEI4A8MW99 385 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 AURKAO14965 403 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 TM7SF2O76062 418 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 RPL21P46778 160 aaKnown RBP19.71■□□□□ 0.75
UPF3A-211ENST00000618700 MORF4L2Q15014 288 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 SETMARQ53H47 684 aaPredicted RBP19.71■□□□□ 0.75
UPF3A-211ENST00000618700 LYSMD4Q5XG99 296 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 HIBCHQ6NVY1 386 aaPredicted RBP19.71■□□□□ 0.75
UPF3A-211ENST00000618700 LRRC8BQ6P9F7 803 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 ARMCX6Q7L4S7 300 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 GLT6D1Q7Z4J2 308 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 CAND1Q86VP6 1230 aaKnown RBP19.71■□□□□ 0.75
UPF3A-211ENST00000618700 RAVER1Q8IY67 606 aaKnown RBP19.71■□□□□ 0.75
UPF3A-211ENST00000618700 DNAAF3Q8N9W5 541 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 KLK6Q92876 244 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 DMTF1Q9Y222 760 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 UTP11Q9Y3A2 253 aaKnown RBP19.71■□□□□ 0.75
UPF3A-211ENST00000618700 SCN8AQ9UQD0 1980 aa19.71■□□□□ 0.75
UPF3A-211ENST00000618700 A0A1W2PPC4 97 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 BHMG1C9JSJ3 638 aaPredicted RBP19.7■□□□□ 0.74
UPF3A-211ENST00000618700 AP3B1O00203 1094 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 RECQL5O94762 991 aaPredicted RBP19.7■□□□□ 0.74
UPF3A-211ENST00000618700 MLNP12872 115 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 TPH1P17752 444 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 CD27P26842 260 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 MAGEA3P43357 314 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 TAF1AQ15573 450 aaPredicted RBP19.7■□□□□ 0.74
UPF3A-211ENST00000618700 GLE1Q53GS7 698 aaKnown RBP19.7■□□□□ 0.74
UPF3A-211ENST00000618700 CERCAMQ5T4B2 595 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 PRR23BQ6ZRT6 265 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 CYP2U1Q7Z449 544 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 TECPR1Q7Z6L1 1165 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 C1orf216Q8TAB5 229 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 BRSK1Q8TDC3 778 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 SEC14L1Q92503 715 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 SNX19Q92543 992 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 DTD2Q96FN9 168 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 SERPINB12Q96P63 405 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 LENG8Q96PV6 779 aaPredicted RBP19.7■□□□□ 0.74
UPF3A-211ENST00000618700 PHOX2BQ99453 314 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 GPR63Q9BZJ6 419 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 GRHL1Q9NZI5 618 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 WHRNQ9P202 907 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 SNX24Q9Y343 169 aa19.7■□□□□ 0.74
UPF3A-211ENST00000618700 MYO15AQ9UKN7 3530 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 PLXNA2O75051 1894 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 SMAPO00193 183 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 LZTS3O60299 673 aaPredicted RBP19.69■□□□□ 0.74
UPF3A-211ENST00000618700 HNRNPA2B1P22626 353 aaKnown RBP19.69■□□□□ 0.74
UPF3A-211ENST00000618700 HMGCLP35914 325 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 ETV3P41162 512 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 NBL1P41271 181 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 DHPSP49366 369 aaPredicted RBP19.69■□□□□ 0.74
UPF3A-211ENST00000618700 ITGA8P53708 1063 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 SARNPP82979 210 aaKnown RBP19.69■□□□□ 0.74
UPF3A-211ENST00000618700 SLC7A5Q01650 507 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 SGCGQ13326 291 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 POU6F1Q14863 301 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 ACOX1Q15067 660 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 WSCD2Q2TBF2 565 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 WDR45BQ5MNZ6 344 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 RFLNAQ6ZTI6 216 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 Q6ZVL8 140 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 TP53I13Q8NBR0 393 aaPredicted RBP19.69■□□□□ 0.74
UPF3A-211ENST00000618700 DENND6BQ8NEG7 585 aa19.69■□□□□ 0.74
UPF3A-211ENST00000618700 KLF6Q99612 283 aaPredicted RBP19.69■□□□□ 0.74
UPF3A-211ENST00000618700 C1QTNF7Q9BXJ2 289 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms