RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 EPHB1P54762 984 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 NXPH1P58417 271 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 CDK18Q07002 472 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 ELP6Q0PNE2 266 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 INPP5AQ14642 412 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 ACOX1Q15067 660 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 LONRF2Q1L5Z9 754 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 ERAP2Q6P179 960 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 CDKL3Q8IVW4 592 aaPredicted RBP13.51□□□□□ -0.25
LINC00540-202ENST00000616974 HCAR2Q8TDS4 363 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 CAPZA3Q96KX2 299 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 COQ10AQ96MF6 247 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 SPATA13Q96N96 652 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 ABCG8Q9H221 673 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 PPIL1Q9Y3C6 166 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 UNC13CQ8NB66 2214 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 DSPP15924 2871 aaKnown RBP13.5□□□□□ -0.25
LINC00540-202ENST00000616974 CAPN8A6NHC0 703 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 VILLO15195 856 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 KIF5CO60282 957 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 SOD1P00441 154 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 VIPR1P32241 457 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 HOXD12P35452 270 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 GRIA1P42261 906 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 SGCGQ13326 291 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 MTM1Q13496 603 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 STAT4Q14765 748 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 TRIP13Q15645 432 aaPredicted RBP13.5□□□□□ -0.25
LINC00540-202ENST00000616974 SIRPB2Q5JXA9 342 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 ABI3BPQ7Z7G0 1075 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 TRIM74Q86UV6 250 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 LENG8Q96PV6 779 aaPredicted RBP13.5□□□□□ -0.25
LINC00540-202ENST00000616974 FCRL5Q96RD9 977 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 FICDQ9BVA6 458 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 SNX12Q9UMY4 172 aa13.5□□□□□ -0.25
LINC00540-202ENST00000616974 ZNF106Q9H2Y7 1883 aaKnown RBP13.5□□□□□ -0.25
LINC00540-202ENST00000616974 C1orf232A0A0U1RR37 186 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 PDE2AO00408 941 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-202ENST00000616974 LZTS3O60299 673 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-202ENST00000616974 CELA2BP08218 269 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-202ENST00000616974 CETN2P41208 172 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 PDE1CQ14123 709 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-202ENST00000616974 RALGPS1Q5JS13 557 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 RBFAQ8N0V3 343 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 RASGEF1CQ8N431 466 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 CEP76Q8TAP6 659 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 NAT14Q8WUY8 206 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 BPIFA1Q9NP55 256 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 ARFGAP3Q9NP61 516 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 MRPL40Q9NQ50 206 aaKnown RBP13.49□□□□□ -0.25
LINC00540-202ENST00000616974 UCKL1Q9NWZ5 548 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 SUSD2Q9UGT4 822 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 FAM153AQ9UHL3 310 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 ZNF148Q9UQR1 794 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 KCTD3Q9Y597 815 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 PCYT1BQ9Y5K3 369 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-202ENST00000616974 LOC285095A0A1B0GVY8 99 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 TM4SF5O14894 197 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 FUCA1P04066 466 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 ADRA1AP35348 466 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 PFN3P60673 137 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 POLR2LP62875 67 aaKnown RBP13.49□□□□□ -0.25
LINC00540-202ENST00000616974 FZD2Q14332 565 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 DENND5AQ6IQ26 1287 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 TECPR1Q7Z6L1 1165 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 PNPLA1Q8N8W4 532 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 TMEM9BQ9NQ34 198 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 GPR27Q9NS67 375 aa13.49□□□□□ -0.25
LINC00540-202ENST00000616974 GOLGA6CA6NDK9 693 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 GOLGA6BA6NDN3 693 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 C5orf60A6NFR6 353 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 TMEM202A6NGA9 273 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 CCL22O00626 93 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 GOLGA6DP0CG33 693 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 CD59P13987 128 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 AKT2P31751 481 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 CCDC15Q0P6D6 951 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 MSLNQ13421 630 aaPredicted RBP13.48□□□□□ -0.25
LINC00540-202ENST00000616974 LRRC14Q15048 493 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 SLC1A5Q15758 541 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 USP45Q70EL2 814 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 PDCD7Q8N8D1 485 aaKnown RBP13.48□□□□□ -0.25
LINC00540-202ENST00000616974 MFSD2AQ8NA29 543 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 KLHDC7BQ96G42 594 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 GOLGA6AQ9NYA3 693 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 DMTF1Q9Y222 760 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 MAP1BP46821 2468 aaKnown RBP13.48□□□□□ -0.25
LINC00540-202ENST00000616974 KIF26BQ2KJY2 2108 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 CCDC78A2IDD5 438 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 CASC3O15234 703 aaKnown RBP13.48□□□□□ -0.25
LINC00540-202ENST00000616974 MYF5P13349 255 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 TPH1P17752 444 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 VPS41P49754 854 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 MRPS25P82663 173 aaKnown RBP13.48□□□□□ -0.25
LINC00540-202ENST00000616974 EIF2B5Q13144 721 aaKnown RBP13.48□□□□□ -0.25
LINC00540-202ENST00000616974 KCTD11Q693B1 232 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 SFTPA2Q8IWL1 248 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 TTC13Q8NBP0 860 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 RTP4Q96DX8 246 aa13.48□□□□□ -0.25
LINC00540-202ENST00000616974 CCDC97Q96F63 343 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms