RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 H3BM21 787 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 SDC3O75056 442 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 ZNF189O75820 626 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-215ENST00000601150 PIAS2O75928 621 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 MT-CYBP00156 380 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-215ENST00000601150 CSF2P04141 144 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 ADRB1P08588 477 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 NME1P15531 152 aaKnown RBP16.86■□□□□ 0.29
TRIM28-215ENST00000601150 CD68P34810 354 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-215ENST00000601150 HNRNPKP61978 463 aaKnown RBP eCLIP16.86■□□□□ 0.29
TRIM28-215ENST00000601150 CDK18Q07002 472 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 GALNT3Q14435 633 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 RPS6KA1Q15418 735 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 PCSK7Q16549 785 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 ZNF542PQ5EBM4 170 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 MEI1Q5TIA1 1274 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 LRRC66Q68CR7 880 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 ESRP1Q6NXG1 681 aaKnown RBP16.86■□□□□ 0.29
TRIM28-215ENST00000601150 DARS2Q6PI48 645 aaKnown RBP16.86■□□□□ 0.29
TRIM28-215ENST00000601150 PLA2G15Q8NCC3 412 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 DTD2Q96FN9 168 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 FCRL5Q96RD9 977 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 TRIB3Q96RU7 358 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 FAM118BQ9BPY3 351 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 C10orf88Q9H8K7 445 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 OR1A2Q9Y585 309 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 SPTBN2O15020 2390 aa16.86■□□□□ 0.29
TRIM28-215ENST00000601150 KCNN4O15554 427 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 PMPCBO75439 489 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 STK10O94804 968 aaKnown RBP16.85■□□□□ 0.29
TRIM28-215ENST00000601150 DGKAP23743 735 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 HTR1BP28222 390 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 ETV3P41162 512 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 STC1P52823 247 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 EIF2B5Q13144 721 aaKnown RBP16.85■□□□□ 0.29
TRIM28-215ENST00000601150 KLF1Q13351 362 aaPredicted RBP16.85■□□□□ 0.29
TRIM28-215ENST00000601150 NFATC4Q14934 902 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 SEL1L2Q5TEA6 688 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 CCDC70Q6NSX1 233 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 PNCKQ6P2M8 343 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 Q6ZVL8 140 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 KDELC2Q7Z4H8 507 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 EID2Q8N6I1 236 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 TRIM58Q8NG06 486 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 ATL2Q8NHH9 583 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 BTN2A2Q8WVV5 523 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 UBP1Q9NZI7 540 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 FTSJ1Q9UET6 329 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 FAM153AQ9UHL3 310 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 RSPH14Q9UHP6 348 aa16.85■□□□□ 0.29
TRIM28-215ENST00000601150 A0A0U1RQS6 177 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 CACNB4O00305 520 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-215ENST00000601150 NDST3O95803 873 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 HOXC4P09017 264 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-215ENST00000601150 TSHRP16473 764 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 JUNDP17535 347 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 TRIM23P36406 574 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 PTSQ03393 145 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 ITPRIPL1Q6GPH6 555 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 KDELC1Q6UW63 502 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 TECPR1Q7Z6L1 1165 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 RAVER1Q8IY67 606 aaKnown RBP16.84■□□□□ 0.29
TRIM28-215ENST00000601150 SLC25A45Q8N413 288 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 WDR92Q96MX6 357 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 GBA3Q9H227 469 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 CARD9Q9H257 536 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 UCKL1Q9NWZ5 548 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 KLF15Q9UIH9 416 aa16.84■□□□□ 0.29
TRIM28-215ENST00000601150 ARID1BQ8NFD5 2236 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-215ENST00000601150 C1orf232A0A0U1RR37 186 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 TCRBV7S2A1N4TA0A589 114 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 F5H423 210 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-215ENST00000601150 K7ESM1 405 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 TNFSF14O43557 240 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 CLDN7O95471 211 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 C1SP09871 688 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 TNNT3P45378 269 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-215ENST00000601150 WNT3AP56704 352 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 KIAA1024LP59773 190 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 PPARDQ03181 441 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 DPTQ07507 201 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 CDKN3Q16667 212 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 FAXCQ5TGI0 409 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 ENPP7Q6UWV6 458 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 ZNF765Q7L2R6 523 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 PHACTR4Q8IZ21 702 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 NRSN1Q8IZ57 195 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 PELI3Q8N2H9 469 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 CCHCR1Q8TD31 782 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 FUBP1Q96AE4 644 aaKnown RBP16.83■□□□□ 0.28
TRIM28-215ENST00000601150 OXNAD1Q96HP4 312 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-215ENST00000601150 SRPK1Q96SB4 655 aaKnown RBP16.83■□□□□ 0.28
TRIM28-215ENST00000601150 SLC13A1Q9BZW2 595 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 WDR26Q9H7D7 661 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 CAAP1Q9H8G2 361 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 USP29Q9HBJ7 922 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 MAGEE1Q9HCI5 957 aa16.83■□□□□ 0.28
TRIM28-215ENST00000601150 APOBEC3BQ9UH17 382 aaKnown RBP16.83■□□□□ 0.28
TRIM28-215ENST00000601150 APOBEC2Q9Y235 224 aaKnown RBP16.83■□□□□ 0.28
TRIM28-215ENST00000601150 R3HDM2Q9Y2K5 976 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms