RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CCNJLQ8IV13 435 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 OR2T34Q8NGX1 318 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 CXorf40AQ8TE69 158 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 STYXQ8WUJ0 223 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 EID2BQ96D98 161 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 STAMBPL1Q96FJ0 436 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 EBNA1BP2Q99848 306 aaKnown RBP14.36□□□□□ -0.11
UPF1-211ENST00000600868 TPSD1Q9BZJ3 242 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 WSB2Q9NYS7 404 aaPredicted RBP14.36□□□□□ -0.11
UPF1-211ENST00000600868 IL17CQ9P0M4 197 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 CYP8B1Q9UNU6 501 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 ZDBF2Q9HCK1 2354 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 CACNA1IQ9P0X4 2223 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 MYLKQ15746 1914 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3DA0A087WVF3 549 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3IA0A087WXS9 549 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3EA0A087X179 549 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3KA0A087X1G2 549 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 IGHV1OR15-9A0A0B4J2B8 117 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 A0A0U1RQS6 177 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 FAM237BA0A1B0GVD1 139 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 RGSL1A5PLK6 1076 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 FAM86C2PA6NEL3 165 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3FA6NER0 549 aaPredicted RBP14.35□□□□□ -0.11
UPF1-211ENST00000600868 PRR33A8MZF0 331 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 C10orf142B7Z368 130 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3LB9A6J9 549 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 BANF1O75531 89 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 PCDH8O95206 1070 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 SEMA4FO95754 770 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TTC4O95801 387 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 C1SP09871 688 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3HP0C7X1 549 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 ZNF140P52738 457 aaPredicted RBP14.35□□□□□ -0.11
UPF1-211ENST00000600868 CSTF1Q05048 431 aaKnown RBP14.35□□□□□ -0.11
UPF1-211ENST00000600868 SLMAPQ14BN4 828 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 SKIDA1Q1XH10 827 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TSTD2Q5T7W7 516 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3GQ6DHY5 549 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3CQ6IPX1 549 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 KIAA1161Q6NSJ0 714 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 CASC4Q6P4E1 433 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TMEM135Q86UB9 458 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 WDR5BQ86VZ2 330 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 IGDCC3Q8IVU1 814 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 ZBED8Q8IZ13 594 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 TBC1D3Q8IZP1 549 aaPredicted RBP14.35□□□□□ -0.11
UPF1-211ENST00000600868 TOE1Q96GM8 510 aaKnown RBP14.35□□□□□ -0.11
UPF1-211ENST00000600868 WDR83Q9BRX9 315 aaKnown RBP14.35□□□□□ -0.11
UPF1-211ENST00000600868 WRAP53Q9BUR4 548 aaKnown RBP14.35□□□□□ -0.11
UPF1-211ENST00000600868 SAYSD1Q9NPB0 183 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 CHRAC1Q9NRG0 131 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 RAD18Q9NS91 495 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 PKP3Q9Y446 797 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 MAD1L1Q9Y6D9 718 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 PLXND1Q9Y4D7 1925 aa14.35□□□□□ -0.11
UPF1-211ENST00000600868 STX7O15400 261 aaKnown RBP14.34□□□□□ -0.11
UPF1-211ENST00000600868 MMP20O60882 483 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 USP1O94782 785 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 FAM153BP0C7A2 387 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 C6P13671 934 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 PGAM1P18669 254 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 MAGEA4P43358 317 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 SPINT3P49223 89 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 NUBP1P53384 320 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 PTPN5P54829 565 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 RPS21P63220 83 aaKnown RBP14.34□□□□□ -0.11
UPF1-211ENST00000600868 ACVR1Q04771 509 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 DMWDQ09019 674 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 FASTKD3Q14CZ7 662 aaKnown RBP14.34□□□□□ -0.11
UPF1-211ENST00000600868 AGERQ15109 404 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 FAM153CQ494X1 144 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 TMEM259Q4ZIN3 620 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 TMEM31Q5JXX7 168 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 HP1BP3Q5SSJ5 553 aaPredicted RBP14.34□□□□□ -0.11
UPF1-211ENST00000600868 ZDHHC20Q5W0Z9 365 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 TSSK4Q6SA08 328 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 CYP2U1Q7Z449 544 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 HSD11B1LQ7Z5J1 315 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 TECPR1Q7Z6L1 1165 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 LONP2Q86WA8 852 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 TRIM69Q86WT6 500 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 HORMAD1Q86X24 394 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 GSPT2Q8IYD1 628 aaKnown RBP14.34□□□□□ -0.11
UPF1-211ENST00000600868 NRSN1Q8IZ57 195 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 FBXO36Q8NEA4 188 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 OR4K2Q8NGD2 314 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 PYROXD1Q8WU10 500 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 RLN3Q8WXF3 142 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 SPACA7Q96KW9 195 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 COQ10AQ96MF6 247 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 ZNF778Q96MU6 729 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 FAM126AQ9BYI3 521 aaPredicted RBP14.34□□□□□ -0.11
UPF1-211ENST00000600868 CDH19Q9H159 772 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 PCED1AQ9H1Q7 454 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 TREX1Q9NSU2 369 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 NLE1Q9NVX2 485 aaPredicted RBP14.34□□□□□ -0.11
UPF1-211ENST00000600868 KCTD5Q9NXV2 234 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 PKD2L2Q9NZM6 624 aa14.34□□□□□ -0.11
UPF1-211ENST00000600868 ZC3H7BQ9UGR2 993 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms