RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TUBGCP3Q96CW5 907 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 FSD1LQ9BXM9 530 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 TBC1D13Q9NVG8 400 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 MAP10Q9P2G4 905 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 IFT80Q9P2H3 777 aaPredicted RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 SLC27A5Q9Y2P5 690 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 OR51F1A6NGY5 319 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 ZNF487B1APH4 448 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 BCL10O95999 233 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 MMP3P08254 477 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 BMP2P12643 396 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 ARNTP27540 789 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 TRAP1Q12931 704 aaKnown RBP18.37■□□□□ 0.53
UPF1-210ENST00000600689 TRIM16LQ309B1 348 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 DHRS4L2Q6PKH6 230 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 IFNLR1Q8IU57 520 aaPredicted RBP18.37■□□□□ 0.53
UPF1-210ENST00000600689 DCBLD1Q8N8Z6 715 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 CCM2LQ9NUG4 571 aaPredicted RBP18.37■□□□□ 0.53
UPF1-210ENST00000600689 CMTM6Q9NX76 183 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 ARPC2O15144 300 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 MYF6P23409 242 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 NFATC3Q12968 1075 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 FBXO47Q5MNV8 452 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 CATSPER4Q7RTX7 472 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 PCYOX1LQ8NBM8 494 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 BEST2Q8NFU1 509 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 ACDQ96AP0 544 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 RNF145Q96MT1 663 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 EXD2Q9NVH0 621 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 OR12D3Q9UGF7 316 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 ZNHIT2Q9UHR6 403 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 DAPK2Q9UIK4 370 aa18.37■□□□□ 0.53
UPF1-210ENST00000600689 NPHS1O60500 1241 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 IL7RP16871 459 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 CCNA2P20248 432 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 ALDH4A1P30038 563 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 TPD52P55327 224 aaPredicted RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 ITKQ08881 620 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 OR6J1Q8NGC5 347 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 DQX1Q8TE96 717 aaKnown RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 PPP1R14BQ96C90 147 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 TEKT5Q96M29 485 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 MUS81Q96NY9 551 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 NSUN5Q96P11 429 aaKnown RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 NPY6RQ99463 290 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 NEURL2Q9BR09 285 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 RHOBTB2Q9BYZ6 727 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 TKTL2Q9H0I9 626 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 PKD2L2Q9NZM6 624 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 TSC22D4Q9Y3Q8 395 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 ZBBXA8MT70 800 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 A8MU76 341 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 RSL1D1O76021 490 aaKnown RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 RECQL4O94761 1208 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 LRIG2O94898 1065 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 HOXA11P31270 313 aaPredicted RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 FRG1Q14331 258 aaKnown RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 SLC36A3Q495N2 470 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 C9orf57Q5W0N0 161 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 APPL2Q8NEU8 664 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 GABPB2Q8TAK5 448 aaPredicted RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 NPLOC4Q8TAT6 608 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 C19orf60Q96EN9 201 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 OSMRQ99650 979 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 TBL1YQ9BQ87 522 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 CCDC90BQ9GZT6 254 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 BRD8Q9H0E9 1235 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 MID1IP1Q9NPA3 183 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 IGSF5Q9NSI5 407 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 SLAMF8Q9P0V8 285 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 NUDT5Q9UKK9 219 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 RBM47A0AV96 593 aaKnown RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 MAGEB16A2A368 324 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 TMEM247A6NEH6 219 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 XYLBO75191 536 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 EEF1DP29692 281 aaKnown RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 OXCT1P55809 520 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 RGS21Q2M5E4 152 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 GPRIN1Q7Z2K8 1008 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 OSTM1Q86WC4 334 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 PPHLN1Q8NEY8 458 aaKnown RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 NUDT8Q8WV74 236 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 C9orf16Q9BUW7 83 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 RNF39Q9H2S5 420 aa18.36■□□□□ 0.53
UPF1-210ENST00000600689 EML4Q9HC35 981 aaKnown RBP18.36■□□□□ 0.53
UPF1-210ENST00000600689 ZSWIM8A7E2V4 1837 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 H0YJX3 145 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 ARL1P40616 181 aaPredicted RBP18.35■□□□□ 0.53
UPF1-210ENST00000600689 DIO3P55073 304 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 MAPK11Q15759 364 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 NEPROQ6NW34 567 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 CYHR1Q6ZMK1 362 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 RALGPS2Q86X27 583 aaPredicted RBP18.35■□□□□ 0.53
UPF1-210ENST00000600689 SEPT8Q92599 483 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 ZNF419Q96HQ0 510 aaPredicted RBP18.35■□□□□ 0.53
UPF1-210ENST00000600689 PTPN18Q99952 460 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 HEPHQ9BQS7 1158 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 MEAF6Q9HAF1 191 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 GID8Q9NWU2 228 aa18.35■□□□□ 0.53
UPF1-210ENST00000600689 TIMM22Q9Y584 194 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms