RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZNF778Q96MU6 729 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 TTC1Q99614 292 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 CDH19Q9H159 772 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 MFSD1Q9H3U5 465 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 LMAN1LQ9HAT1 526 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 PLAC1Q9HBJ0 212 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 PCDH12Q9NPG4 1184 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 PKD2L2Q9NZM6 624 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 IL17CQ9P0M4 197 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 BCCIPQ9P287 314 aaKnown RBP eCLIP15.26■□□□□ 0.03
TRIM28-209ENST00000597423 PSMC3IPQ9P2W1 217 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-209ENST00000597423 SLC2A6Q9UGQ3 507 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 ZNF180Q9UJW8 692 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 APPL1Q9UKG1 709 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 SARDHQ9UL12 918 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 NCKAP1Q9Y2A7 1128 aa15.26■□□□□ 0.03
TRIM28-209ENST00000597423 KANSL1LA0AUZ9 987 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 SMIM23A6NLE4 172 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 H0Y858 1186 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 AGPSO00116 658 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 NEMP1O14524 444 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 KRT37O76014 449 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 KRT38O76015 456 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 CLDN7O95471 211 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 SLC4A1P02730 911 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 PRKCGP05129 697 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 SLCO1A2P46721 670 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 ARCN1P48444 511 aaKnown RBP15.25■□□□□ 0.03
TRIM28-209ENST00000597423 TMPRSS15P98073 1019 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 UBAP2Q5T6F2 1119 aaKnown RBP15.25■□□□□ 0.03
TRIM28-209ENST00000597423 IER5LQ5T953 404 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 TEDDM1Q5T9Z0 273 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 ADGRD1Q6QNK2 874 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 AFTPHQ6ULP2 937 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 KIAA0408Q6ZU52 694 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 MARK2Q7KZI7 788 aaKnown RBP15.25■□□□□ 0.03
TRIM28-209ENST00000597423 DPPA4Q7L190 304 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 ZSWIM9Q86XI8 627 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 GJD3Q8N144 294 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 OTUD6BQ8N6M0 293 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 OR13J1Q8NGT2 312 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 OR4L1Q8NH43 312 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 GANCQ8TET4 914 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.25■□□□□ 0.03
TRIM28-209ENST00000597423 VOPP1Q96AW1 172 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 MTBPQ96DY7 904 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 DNAJC1Q96KC8 554 aaKnown RBP15.25■□□□□ 0.03
TRIM28-209ENST00000597423 TBATAQ96M53 351 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 PAFAH2Q99487 392 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 CPNE1Q99829 537 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 SH3GL2Q99962 352 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 OMDQ99983 421 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 TRIM56Q9BRZ2 755 aaKnown RBP15.25■□□□□ 0.03
TRIM28-209ENST00000597423 TMBIM4Q9HC24 238 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 POLMQ9NP87 494 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-209ENST00000597423 ZDHHC4Q9NPG8 344 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 IARS2Q9NSE4 1012 aaKnown RBP15.25■□□□□ 0.03
TRIM28-209ENST00000597423 KCTD5Q9NXV2 234 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 B4GALT6Q9UBX8 382 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 MMP17Q9ULZ9 603 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 VPS9D1Q9Y2B5 631 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 KCTD3Q9Y597 815 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 SLC30A1Q9Y6M5 507 aa15.25■□□□□ 0.03
TRIM28-209ENST00000597423 KIAA1549LQ6ZVL6 1849 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 TICRRQ7Z2Z1 1910 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 NPIPB15A6NHN6 443 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 FAM170BA6NMN3 283 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 CHURC1-FNTBB4DL54 471 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 H7C0S8 307 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 PSMD11O00231 422 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 STK25O00506 426 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 AURKAO14965 403 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 ADAM23O75077 832 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 CHRNB1P11230 501 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 ACADMP11310 421 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 ADRB3P13945 408 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 CD72P21854 359 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 PMLP29590 882 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 SPRP35270 261 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 GP5P40197 560 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 RPS14P62263 151 aaKnown RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 UBXN2BQ14CS0 331 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 CDKN3Q16667 212 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 POM121L1PQ3SYA9 428 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 TTC31Q49AM3 519 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 FASTKD1Q53R41 847 aaKnown RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 AARS2Q5JTZ9 985 aaKnown RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 AGBL2Q5U5Z8 902 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 LYPLAL1Q5VWZ2 237 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 LRRC66Q68CR7 880 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 PARS2Q7L3T8 475 aaKnown RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 TMPRSS6Q8IU80 811 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 GPR150Q8NGU9 434 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 EPS8L3Q8TE67 593 aaKnown RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 ARRDC3Q96B67 414 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 MRRFQ96E11 262 aaKnown RBP15.24■□□□□ 0.03
TRIM28-209ENST00000597423 TCF12Q99081 682 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 DHRS4Q9BTZ2 278 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 CATSPERZQ9NTU4 200 aa15.24■□□□□ 0.03
TRIM28-209ENST00000597423 LGALS13Q9UHV8 139 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms