RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 OPA1O60313 960 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 FZD6O60353 706 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 LCA5LO95447 670 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 JCHAINP01591 159 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 HLA-DQB2P05538 268 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 PDHA1P08559 390 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 CTPS1P17812 591 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 LHCGRP22888 699 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 ETV3P41162 512 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 HADHBP55084 474 aaKnown RBP15.28■□□□□ 0.04
TRIM28-203ENST00000593582 CYP4F3Q08477 520 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 PPIDQ08752 370 aaKnown RBP15.28■□□□□ 0.04
TRIM28-203ENST00000593582 PDK1Q15118 436 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 LVRNQ6Q4G3 990 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 GKN2Q86XP6 184 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 RFX6Q8HWS3 928 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 DCBLD1Q8N8Z6 715 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 MAPK15Q8TD08 544 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 RNF25Q96BH1 459 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-203ENST00000593582 DTD2Q96FN9 168 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 PANX2Q96RD6 677 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 PCDHA13Q9Y5I0 950 aa15.28■□□□□ 0.04
TRIM28-203ENST00000593582 GOLGA4Q13439 2230 aaKnown RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 A0A0J9YYE9 177 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 EME2A4GXA9 379 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 GOLGA6CA6NDK9 693 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 GOLGA6BA6NDN3 693 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 TMEM202A6NGA9 273 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 TNFRSF10CO14798 259 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 PPP1R12AO14974 1030 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 PSTPIP1O43586 416 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 IPO7O95373 1038 aaKnown RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 MT-CO3P00414 261 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 TRBC1P01850 177 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 CELA2BP08218 269 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 GOLGA6DP0CG33 693 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 RPL26P61254 145 aaKnown RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 IFI35P80217 286 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 AP1B1Q10567 949 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 PTPRRQ15256 657 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 TCEA2Q15560 299 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 LRRC66Q68CR7 880 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 GUSBP11Q6P575 273 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 Q6ZVL8 140 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 EFL1Q7Z2Z2 1120 aaKnown RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 HSD11B1LQ7Z5J1 315 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 TSPAN33Q86UF1 283 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 SLC35F3Q8IY50 421 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 CBARPQ8N350 705 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 ARRDC2Q8TBH0 407 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 OR1E3Q8WZA6 343 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 NAT6Q93015 286 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 PDXPQ96GD0 296 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 RBM15Q96T37 977 aaKnown RBP eCLIP15.27■□□□□ 0.047e-9■■□□□ 11.9
TRIM28-203ENST00000593582 LGR4Q9BXB1 951 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 TDRD1Q9BXT4 1180 aaKnown RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 BRD8Q9H0E9 1235 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 PCDH9Q9HC56 1237 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 PHPT1Q9NRX4 125 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 GOLGA6AQ9NYA3 693 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 DNPEPQ9ULA0 475 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 RPL26L1Q9UNX3 145 aaKnown RBP15.27■□□□□ 0.04
TRIM28-203ENST00000593582 CHKBQ9Y259 395 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 ALG6Q9Y672 507 aa15.27■□□□□ 0.04
TRIM28-203ENST00000593582 SHROOM3Q8TF72 1996 aa15.27■□□□□ 0.03
TRIM28-203ENST00000593582 LRRK1Q38SD2 2015 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 A0A0A6YYK5 440 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-203ENST00000593582 MYCLP1P12525 358 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-203ENST00000593582 ZNF30P17039 623 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 NR2C2P49116 596 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 DYNLT1P63172 113 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 NIPAL4Q0D2K0 466 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 TFDP2Q14188 446 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 CRTC1Q6UUV9 634 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 MFSD7Q6UXD7 560 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 BZW1Q7L1Q6 419 aaKnown RBP15.26■□□□□ 0.03
TRIM28-203ENST00000593582 HEATR4Q86WZ0 1026 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 TMTC1Q8IUR5 882 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 PELI3Q8N2H9 469 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 ARL10Q8N8L6 244 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 OLFM3Q96PB7 478 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 DEPDC7Q96QD5 511 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 NRSN2Q9GZP1 204 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 FGF22Q9HCT0 170 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 SEPT10Q9P0V9 454 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 GULP1Q9UBP9 304 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 MOSPD1Q9UJG1 213 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 GPR34Q9UPC5 381 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.26■□□□□ 0.03
TRIM28-203ENST00000593582 AK5Q9Y6K8 562 aa15.26■□□□□ 0.03
TRIM28-203ENST00000593582 DSPP15924 2871 aaKnown RBP15.26■□□□□ 0.03
TRIM28-203ENST00000593582 CAPN8A6NHC0 703 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 CD86P42081 329 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 CDKN2BP42772 138 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 PTSQ03393 145 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 DPTQ07507 201 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 ZBTB17Q13105 803 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 IHHQ14623 411 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 CDCP2Q5VXM1 449 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 KCTD16Q68DU8 428 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms