RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PPWD1Q96BP3 646 aaKnown RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 PPP1R14BQ96C90 147 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 TUBGCP3Q96CW5 907 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 PHF21BQ96EK2 531 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 PIWIL1Q96J94 861 aaKnown RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 ITGB1BP2Q9UKP3 347 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 PCDHB1Q9Y5F3 818 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 TNPO3Q9Y5L0 923 aaKnown RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 H3BNC9 293 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 TXNDC9O14530 226 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 ALOX15BO15296 676 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 DYRK3O43781 588 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 KATNA1O75449 491 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 BAG2O95816 211 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 BTKQ06187 659 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 CTBP1Q13363 440 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 PAFAH1B3Q15102 231 aaKnown RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 CACHD1Q5VU97 1274 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 C1orf53Q5VUE5 145 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 PM20D1Q6GTS8 502 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 BRSK1Q8TDC3 778 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 ASZ1Q8WWH4 475 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 TRIM15Q9C019 465 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 NDE1Q9NXR1 346 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 RABL2BQ9UNT1 228 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 PSMD12O00232 456 aaPredicted RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 LTA4HP09960 611 aaKnown RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 PRKAA2P54646 552 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 CCSAPQ6IQ19 270 aaPredicted RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 TPRG1Q6ZUI0 275 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 SPATA21Q7Z572 469 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 FGF13Q92913 245 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 TBATAQ96M53 351 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 ACOX2Q99424 681 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 NELL2Q99435 816 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 OPTCQ9UBM4 332 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 J3KR12 359 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 AVILO75366 819 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 RASGRP1O95267 797 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 PRAMEF1O95521 474 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 KLF8O95600 359 aaPredicted RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 TCF4P15884 667 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 PITX1P78337 314 aaPredicted RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 ZNF33AQ06730 810 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 CRYMQ14894 314 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 ZNF438Q7Z4V0 828 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 ADAMTSL2Q86TH1 951 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 TSEN2Q8NCE0 465 aaKnown RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 ARL8AQ96BM9 186 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 IL12RB2Q99665 862 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 SHCBP1LQ9BZQ2 653 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 POLE3Q9NRF9 147 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 SOHLH2Q9NX45 425 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 NDOR1Q9UHB4 597 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 CYTH4Q9UIA0 394 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 TCAF1Q9Y4C2 921 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 H3BM21 787 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 TM9SF1O15321 606 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 FAM153BP0C7A2 387 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 PKMP14618 531 aaKnown RBP9.84□□□□□ -0.83
LIG3-216ENST00000593099 CEBPBP17676 345 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 ABRQ12979 859 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 SERINC3Q13530 473 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 FAM153CQ494X1 144 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 FBXO43Q4G163 708 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 ALFQ53S48 1182 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 PAGE2BQ5JRK9 111 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 SPDYCQ5MJ68 293 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 C9orf50Q5SZB4 431 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 KLHDC10Q6PID8 442 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 TAF8Q7Z7C8 310 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 NLRP14Q86W24 1093 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 OR56A4Q8NGH8 313 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 KLK6Q92876 244 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 REPS1Q96D71 796 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 TRMT2BQ96GJ1 504 aaKnown RBP9.84□□□□□ -0.83
LIG3-216ENST00000593099 NPHS2Q9NP85 383 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 ETAA1Q9NY74 926 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 CA14Q9ULX7 337 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 WNT9AO14904 365 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 PRAMEF11O60813 436 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 TRIM13O60858 407 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 SKAP2O75563 359 aaPredicted RBP9.84□□□□□ -0.83
LIG3-216ENST00000593099 USP1O94782 785 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 HLA-DQB2P05538 268 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 ABHD2P08910 425 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 CCDC166P0CW27 439 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 HLA-EP13747 358 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 PRKCQQ04759 706 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 GALNT2Q10471 571 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 LMAN2Q12907 356 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 FNBP1LQ5T0N5 605 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 CPT1BQ92523 772 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 FERD3LQ96RJ6 166 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 IMP3Q9NV31 184 aaKnown RBP9.84□□□□□ -0.83
LIG3-216ENST00000593099 CACNA2D2Q9NY47 1150 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.84□□□□□ -0.83
LIG3-216ENST00000593099 ATP5HO75947 161 aa9.84□□□□□ -0.83
LIG3-216ENST00000593099 SNUPNO95149 360 aaKnown RBP9.84□□□□□ -0.83
LIG3-216ENST00000593099 VIPP01282 170 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms