RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FAM149AA5PLN7 773 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 TMEM8BA6NDV4 472 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 GCATO75600 419 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 TRBC1P01850 177 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 CKMT1AP12532 417 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 MYF5P13349 255 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 ETV3P41162 512 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 CD86P42081 329 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 NR2C2P49116 596 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 VAV2P52735 878 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 HK3P52790 923 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 SRP54P61011 504 aaKnown RBP23.91■■□□□ 1.42
SHMT1-206ENST00000579558 ZCCHC8Q6NZY4 707 aaKnown RBP23.91■■□□□ 1.42
SHMT1-206ENST00000579558 PNCKQ6P2M8 343 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 B4GALNT4Q76KP1 1039 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 BZW1Q7L1Q6 419 aaKnown RBP23.91■■□□□ 1.42
SHMT1-206ENST00000579558 RD3Q7Z3Z2 195 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 TMPRSS12Q86WS5 348 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 PELI3Q8N2H9 469 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 CBARPQ8N350 705 aaPredicted RBP23.91■■□□□ 1.42
SHMT1-206ENST00000579558 LPCAT1Q8NF37 534 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 KRT35Q92764 455 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 RBM41Q96IZ5 413 aaKnown RBP23.91■■□□□ 1.42
SHMT1-206ENST00000579558 SMIM14Q96QK8 99 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 WDR26Q9H7D7 661 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 PCDH9Q9HC56 1237 aa23.91■■□□□ 1.42
SHMT1-206ENST00000579558 SAE1Q9UBE0 346 aaPredicted RBP23.91■■□□□ 1.42
SHMT1-206ENST00000579558 LRP4O75096 1905 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 hCG_1818297A0A087WSY0 165 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 A0A0U1RQS6 177 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 BTNL10A8MVZ5 291 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 TPP1O14773 563 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 ANXA6P08133 673 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 MMP2P08253 660 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 CTSEP14091 401 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 PECAM1P16284 738 aaPredicted RBP23.9■■□□□ 1.42
SHMT1-206ENST00000579558 TSHRP16473 764 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 TGM2P21980 687 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 TRIM23P36406 574 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 DUSP3P51452 185 aaPredicted RBP23.9■■□□□ 1.42
SHMT1-206ENST00000579558 CLDN6P56747 220 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 RPL26P61254 145 aaKnown RBP23.9■■□□□ 1.42
SHMT1-206ENST00000579558 SKOR1P84550 965 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 FAM182AQ5T1J6 154 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 LRRC66Q68CR7 880 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 CRTC1Q6UUV9 634 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 NYAP1Q6ZVC0 841 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 Q6ZVL8 140 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 KIAA1328Q86T90 577 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 TMEM139Q8IV31 216 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 EXD1Q8NHP7 514 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 AGAP3Q96P47 875 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 LACRTQ9GZZ8 138 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 CLPBQ9H078 707 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 USP29Q9HBJ7 922 aa23.9■■□□□ 1.42
SHMT1-206ENST00000579558 RPL26L1Q9UNX3 145 aaKnown RBP23.9■■□□□ 1.42
SHMT1-206ENST00000579558 LY6G6EA0A0G2JKS1 128 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 CAPN8A6NHC0 703 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 LMO7DNF2Z398 122 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 PRLP01236 227 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 HOXC4P09017 264 aaPredicted RBP23.89■■□□□ 1.41
SHMT1-206ENST00000579558 KELP23276 732 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 HES3Q5TGS1 186 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 FSTL5Q8N475 847 aaPredicted RBP23.89■■□□□ 1.41
SHMT1-206ENST00000579558 KDF1Q8NAX2 398 aaPredicted RBP23.89■■□□□ 1.41
SHMT1-206ENST00000579558 OR56A4Q8NGH8 313 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 P3H4Q92791 437 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 PDXPQ96GD0 296 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 DNPEPQ9ULA0 475 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 DOLKQ9UPQ8 538 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 U3KQA8 63 aa23.89■■□□□ 1.41
SHMT1-206ENST00000579558 GOLGA4Q13439 2230 aaKnown RBP23.89■■□□□ 1.41
SHMT1-206ENST00000579558 GOLGA6CA6NDK9 693 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 GOLGA6BA6NDN3 693 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 TMEM202A6NGA9 273 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 PJA2O43164 708 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 TNFP01375 233 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 CELA2BP08218 269 aaPredicted RBP23.88■■□□□ 1.41
SHMT1-206ENST00000579558 GOLGA6DP0CG33 693 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 JUPP14923 745 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 ZNF30P17039 623 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 ADCY2Q08462 1091 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 PRKD1Q15139 912 aaPredicted RBP23.88■■□□□ 1.41
SHMT1-206ENST00000579558 ELOCQ15369 112 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 TCEA2Q15560 299 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 TECPR1Q7Z6L1 1165 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 TFB1MQ8WVM0 346 aaKnown RBP23.88■■□□□ 1.41
SHMT1-206ENST00000579558 ZCCHC14Q8WYQ9 949 aaKnown RBP23.88■■□□□ 1.41
SHMT1-206ENST00000579558 OR1E3Q8WZA6 343 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 RBM15Q96T37 977 aaKnown RBP eCLIP23.88■■□□□ 1.41
SHMT1-206ENST00000579558 LGR4Q9BXB1 951 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 FGF22Q9HCT0 170 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 PHPT1Q9NRX4 125 aaPredicted RBP23.88■■□□□ 1.41
SHMT1-206ENST00000579558 GOLGA6AQ9NYA3 693 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 NCKIPSDQ9NZQ3 722 aa23.88■■□□□ 1.41
SHMT1-206ENST00000579558 GOLGA6L6A8MZA4 724 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 PDE2AO00408 941 aaPredicted RBP23.87■■□□□ 1.41
SHMT1-206ENST00000579558 YY2O15391 372 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 CTNNA1P35221 906 aaKnown RBP23.87■■□□□ 1.41
SHMT1-206ENST00000579558 E2F1Q01094 437 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms