RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PFDN4Q9NQP4 134 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 C20orf141Q9NUB4 165 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 HPF1Q9NWY4 346 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 KLHL20Q9Y2M5 609 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 NR2E1Q9Y466 385 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 SIP14410 1827 aa5.95□□□□□ -1.46
VPS53-219ENST00000576019 A0A1W2PRX2 142 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 SCAMP1O15126 338 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 CEP104O60308 925 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 EXOC3O60645 756 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 KINO60870 393 aaKnown RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 STAM2O75886 525 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 PRNPP04156 253 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 PCP11498 1178 aaKnown RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 MGAT1P26572 445 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 MTNR1AP48039 350 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 CSTF3Q12996 717 aaKnown RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 SLC14A1Q13336 389 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 SNTB1Q13884 538 aaKnown RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 RUNX2Q13950 521 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 RNF151Q2KHN1 245 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 PREPLQ4J6C6 727 aaPredicted RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 METTL24Q5JXM2 366 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 OTOAQ7RTW8 1153 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 BEND2Q8NDZ0 799 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 TMCO6Q96DC7 493 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 WDYHV1Q96HA8 205 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 PGAM5Q96HS1 289 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 KIRREL1Q96J84 757 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 AK8Q96MA6 479 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 ZNF512Q96ME7 567 aaPredicted RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 AGAP2Q99490 1192 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 CCDC106Q9BWC9 280 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 STRA6Q9BX79 667 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 EPB41L4BQ9H329 900 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 THAP9Q9H5L6 903 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 CYP4F11Q9HBI6 524 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 CHCHD3Q9NX63 227 aaKnown RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 DDX43Q9NXZ2 648 aaKnown RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 MTMR4Q9NYA4 1195 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 FLRT1Q9NZU1 646 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 NKX1-2Q9UD57 310 aaPredicted RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 SEC63Q9UGP8 760 aaKnown RBP5.94□□□□□ -1.46
VPS53-219ENST00000576019 ANAPC2Q9UJX6 822 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 RABL2BQ9UNT1 228 aa5.94□□□□□ -1.46
VPS53-219ENST00000576019 COL11A1P12107 1806 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 ZAR1LA6NP61 321 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 F5H697 171 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 ADAMDEC1O15204 470 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 TADA2AO75478 443 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 IPO13O94829 963 aaKnown RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 ALDOAP04075 364 aaKnown RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 CYP4B1P13584 511 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 CD19P15391 556 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 KCNA2P16389 499 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 ZNF8P17098 575 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 GAP43P17677 238 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 PRPH2P23942 346 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 IGFBP6P24592 240 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 TCF7P36402 384 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 PRKCIP41743 596 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 DGKQP52824 942 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 RPS8P62241 208 aaKnown RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 NIPAL4Q0D2K0 466 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 ALKBH1Q13686 389 aaKnown RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 ALCAMQ13740 583 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 SEMA3AQ14563 771 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 IL13RA2Q14627 380 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 LASP1Q14847 261 aaKnown RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 SF3B3Q15393 1217 aaKnown RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 SLC18A3Q16572 532 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 GSTA3Q16772 222 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 FAM187BQ17R55 369 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 SMU1Q2TAY7 513 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 COL28A1Q2UY09 1125 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 LETM2Q2VYF4 491 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 C2orf76Q3KRA6 126 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 GXYLT1Q4G148 440 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 ARMC4Q5T2S8 1044 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 FAM171A1Q5VUB5 890 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 SFRP4Q6FHJ7 346 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 WDR93Q6P2C0 686 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 TSSK4Q6SA08 328 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 KIF6Q6ZMV9 814 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 RPAINQ86UA6 219 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 FAM83AQ86UY5 434 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 TUSC5Q8IXB3 177 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 CERS5Q8N5B7 392 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 Q8NA96 180 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 FIBINQ8TAL6 211 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 PHOSPHO2Q8TCD6 241 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 KCNE4Q8WWG9 221 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 SEPT1Q8WYJ6 367 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 TAF4BQ92750 862 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 MR1Q95460 341 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 GTF3C6Q969F1 213 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 MRPL38Q96DV4 380 aaKnown RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 BORCS6Q96GS4 357 aa5.93□□□□□ -1.46
VPS53-219ENST00000576019 PRR11Q96HE9 360 aaPredicted RBP5.93□□□□□ -1.46
VPS53-219ENST00000576019 FAM84BQ96KN1 310 aaPredicted RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms